Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0995
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160...    29   3.5  
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323...    29   3.5  
08_02_0715 - 20352613-20352852,20352926-20352982,20354208-203543...    28   4.6  
08_01_0422 + 3737429-3738006,3738083-3738824                           28   4.6  
09_04_0036 + 13974930-13975062,13975156-13975285,13975362-13975938     27   8.0  
05_03_0211 + 10236867-10237075,10238036-10238270,10238433-102386...    27   8.0  
04_01_0441 - 5750765-5750822,5750936-5751026,5751112-5751313,575...    27   8.0  

>12_01_0212 -
           1605544-1605647,1605799-1605842,1606189-1606230,
           1606306-1606394,1606477-1606521,1606801-1606845,
           1606874-1606981,1607065-1607150,1607553-1607640,
           1608185-1608385,1608790-1608865,1608951-1609000,
           1609082-1609144,1609225-1609278,1609395-1609497,
           1610010-1610050,1610654-1610685,1612086-1612224
          Length = 469

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 455 QELERKGTIDLKSRLINRWFRLFPLFVSLMLFCTYILPDI 574
           ++ ++ G++D K  L+  W    PL  S++L+C +   D+
Sbjct: 214 EKADQNGSLDCKKSLLRNW----PLMSSIILYCVFSFHDM 249


>09_04_0683 -
           19431034-19431495,19431632-19431997,19432055-19432326,
           19433621-19433686,19433924-19433978,19434509-19434577,
           19435200-19435307,19435394-19435462,19435883-19436038,
           19436089-19436229,19436514-19436568,19437103-19437233,
           19437382-19437486
          Length = 684

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 275 NALALLVAHKSMAMAHNPYVNKVSFSEVFGMPWAVI 382
           N + +LV     A  H  Y +  SF ++ G PW+V+
Sbjct: 87  NPIWVLVTRMQEAPNHKDYWSMTSFVKLVGRPWSVV 122


>08_02_0715 -
           20352613-20352852,20352926-20352982,20354208-20354339,
           20354754-20354828,20355779-20355943,20356031-20356263,
           20356484-20356574,20356789-20357223,20357911-20357976,
           20358688-20358807,20358915-20359121
          Length = 606

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 347 FSEVFGMPWAVIGRSAILYTDSFLYLSGFL 436
           F+ + G P  +IG + IL+T+S L  S F+
Sbjct: 390 FARICGQPVGIIGNNGILFTESALKGSHFI 419


>08_01_0422 + 3737429-3738006,3738083-3738824
          Length = 439

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 103 SDTATVKSWNYFGRRQRWRDK 165
           S +A V+SW  +GR + WRD+
Sbjct: 275 SSSAAVESWQPWGRLEAWRDQ 295


>09_04_0036 + 13974930-13975062,13975156-13975285,13975362-13975938
          Length = 279

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 449 LLQELERKGTIDLKSRLINRWFRL 520
           LL E E K  IDL  +L NRW ++
Sbjct: 69  LLSETEEKTVIDLHEQLGNRWSKI 92


>05_03_0211 +
           10236867-10237075,10238036-10238270,10238433-10238602,
           10240324-10240466,10240590-10240767,10241441-10242008,
           10243001-10243113,10244521-10244764,10245201-10245278,
           10246500-10246727
          Length = 721

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 273 SMPLLCSLRISQWPWRITLT 332
           + P+L  +RIS WP R+TLT
Sbjct: 239 TQPVLEHVRISTWPGRLTLT 258


>04_01_0441 -
           5750765-5750822,5750936-5751026,5751112-5751313,
           5751392-5752033,5752175-5752409,5752500-5752619,
           5752864-5753282
          Length = 588

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/58 (25%), Positives = 33/58 (56%)
 Frame = -2

Query: 288 KARALIPLNASTPLTLVAASDRSNTFLRLRFNEKALSSFSKFVTPSLSSSKIVPRLNS 115
           K  + +PL+++T    VA S   N+F R+ F++++ ++ +   + +   SK+ P + S
Sbjct: 288 KTVSALPLSSATDRQPVAMSHMPNSFKRM-FSQRSAAAAAATTSTTSPLSKVEPSITS 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,013,840
Number of Sequences: 37544
Number of extensions: 292562
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)