Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0995
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)                 30   1.5  
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_44871| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
          Length = 422

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 215 VFDLSDAATRVKGVDAFRGINALALLVAHKSMAMAH 322
           V DL   A R+ GVD+   ++ALAL + HK     H
Sbjct: 337 VKDLKSDARRIAGVDSSSRLDALALFLQHKHGDYTH 372


>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1322

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 215  VFDLSDAATRVKGVDAFRGINALALLVAHKSMAMAH 322
            V DL   A R+ GVD+   ++ALAL + HK     H
Sbjct: 938  VKDLKSDARRIAGVDSSSRLDALALFLHHKHGDYTH 973


>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 568 RQDVRA--EQHQAHEQRK*PKPSVDEPALQVDRAFPLELLQEVVSVQEPTEVQETV 407
           R+ VR+  E+ Q HE+R   +     P +Q  R  PL L++++ +     E +E +
Sbjct: 282 REYVRSLEERQQKHEERSGEQLKGARPTIQHQRNVPLRLIEQLKTTINDLEQREVI 337


>SB_44871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 514 KPS-VDEPALQVDRAFPLELLQEVVSVQEPTEVQE 413
           +PS ++E ALQV  A  LELL E+    +P +V E
Sbjct: 112 EPSKINELALQVGSAGGLELLSELFETLDPRKVDE 146


>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 20  KVHNTMCTVKNVKRPYSF 73
           K++NT CTV  V  PY+F
Sbjct: 154 KLNNTQCTVSRVLSPYAF 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,409
Number of Sequences: 59808
Number of extensions: 336629
Number of successful extensions: 922
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)