Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0995
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 429 PLRYRKLSVYSIAERPITAHGIPNT 355
           P R RK+    +  RPI+ H  P++
Sbjct: 642 PKRIRKMPSMPLLPRPISCHTTPDS 666


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 121  KSWNYFGRRQRWRDKFRE 174
            K W +FG RQR  D +R+
Sbjct: 1001 KVWLFFGCRQRNLDLYRQ 1018


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 58  TSLFVWESLVHIFLLSDTATVKSWNYFGRRQ 150
           T++ VW+ +   F+ +        NY GR++
Sbjct: 361 TAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 391


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 58  TSLFVWESLVHIFLLSDTATVKSWNYFGRRQ 150
           T++ VW+ +   F+ +        NY GR++
Sbjct: 330 TAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 360


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 58  TSLFVWESLVHIFLLSDTATVKSWNYFGRRQ 150
           T++ VW+ +   F+ +        NY GR++
Sbjct: 381 TAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 411


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 58  TSLFVWESLVHIFLLSDTATVKSWNYFGRRQ 150
           T++ VW+ +   F+ +        NY GR++
Sbjct: 330 TAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 360


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 28  QHYVHSEEC*TSLFVWESLVHIFLLSDTA 114
           +H+ +SEE   ++ +W+  + +  L D A
Sbjct: 209 KHFTNSEEAPGNMGLWDQALALRWLRDNA 237


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 28  QHYVHSEEC*TSLFVWESLVHIFLLSDTA 114
           +H+ +SEE   ++ +W+  + +  L D A
Sbjct: 209 KHFTNSEEAPGNMGLWDQALALRWLRDNA 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,748
Number of Sequences: 438
Number of extensions: 2794
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)