Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0994
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       31   0.13 
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    27   2.7  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   3.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.8  
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ...    26   4.8  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   6.3  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   6.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   6.3  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.3  

>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 72  TTPEL-KEEAYTSICDLLIFFAEH--LHTLHHPNEPSMKQLVYQPDN 203
           T+PE  +   Y+   +L  ++ EH  LH  H+P  PS  +  Y P+N
Sbjct: 262 TSPEAHRTSIYSYSANLPNYYNEHNELHEHHNPQTPSSPESAYSPEN 308


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 309 CGACAVPLCVSHLDHRNCV 253
           CG C    C  HL H NC+
Sbjct: 199 CGYCLHVYCCKHLAHVNCI 217


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 390 IKCYNDYGDIIKATLSKAREINKLNCALTMELAMQALFRDLLRRHATPH 536
           +  + D  +I ++  S+ RE  K NC +++ +    L   L  R A PH
Sbjct: 388 VSSFQDCFEIAESIRSQVRE--KTNCEVSVGIGPNVLLARLALRKAKPH 434


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 140  PAHAAPPQRAVHEAAGVPARQRPVRLAQRLHTGIRVCTT 256
            P  A PP      A  VP       L Q++HTG R+  T
Sbjct: 1727 PPSAPPPPLPASSAPSVPNPGDRSALLQQIHTGTRLKKT 1765


>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 315 GSCGACAVPLCVSHLDHRNCVVQ 247
           GSC  C  P CV  +  RN ++Q
Sbjct: 36  GSCSQCNTPFCVD-VGPRNAIIQ 57


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 141 LHTLHHPNEPSMKQLVYQPDNDL 209
           L+ L H +E S K+L+Y   ND+
Sbjct: 740 LYNLQHTHEESQKELMYGVRNDI 762


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 150 LHHPNEPSMKQLVYQPDNDLCDLLNDFI 233
           L+  NEP+ K +  QPD +  DL+ + I
Sbjct: 600 LNENNEPTTKVVHLQPDGNSFDLMRNLI 627


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/72 (22%), Positives = 30/72 (41%)
 Frame = +3

Query: 240  FVFVQHNYDGQDERRIEELHKRRNFLAAYCKLIVYNVAPIRRAADVFKHYIKCYNDYGDI 419
            F  V + Y+  D  ++EEL K    L    + +   +    +  D FK  +   N+  + 
Sbjct: 1339 FQSVLNKYERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVEN 1398

Query: 420  IKATLSKAREIN 455
            +K  + +A   N
Sbjct: 1399 LKKEVEQANTKN 1410


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 107 HLRPADILRGAPAHAAPPQRAVHEAAGVP 193
           HL    I  G P  + P    +HEA G P
Sbjct: 588 HLNNESIPTGLPVFSGPMTIRIHEADGTP 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,116
Number of Sequences: 5004
Number of extensions: 32512
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)