Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0994
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0459 + 3400288-3400729,3400760-3400806,3401055-3401141,340... 31 0.52
11_06_0146 + 20621730-20621865,20621947-20622026,20622600-206226... 30 1.2
04_04_1668 + 35217254-35218531 30 1.2
12_02_0168 + 14827529-14828050 30 1.6
10_07_0010 + 11772455-11772925 29 3.7
02_03_0178 + 16019981-16020010,16020417-16020674 29 3.7
04_01_0486 - 6404315-6404333,6404803-6405260 28 4.9
02_02_0542 - 11352655-11352759,11353320-11353496,11353589-113536... 28 4.9
08_02_0233 + 14593639-14594468,14594480-14594986,14595362-145958... 28 6.5
06_03_0454 - 20968052-20969758 28 6.5
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 6.5
06_01_0876 - 6712224-6712812,6713777-6715233 27 8.5
05_01_0136 + 915140-915487,915781-916392 27 8.5
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047... 27 8.5
01_05_0098 - 18088331-18088376,18088703-18088935,18089078-180892... 27 8.5
>01_01_0459 +
3400288-3400729,3400760-3400806,3401055-3401141,
3401230-3401561,3401648-3401807,3402155-3402223,
3403165-3403263
Length = 411
Score = 31.5 bits (68), Expect = 0.52
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Frame = +2
Query: 14 RGGPAARLLR----SVHGHRRQRD-HA-----GAQGGGLHEHLRPADILRGAPAHAAPPQ 163
RG P AR+L + H HR +R HA G GGG + R A +L G H PQ
Sbjct: 104 RGAPRARVLGGGMYAAHRHRHERGAHAHGGGGGGGGGGGAKERRAAAVLVGNACHGLFPQ 163
Query: 164 RAV 172
+ V
Sbjct: 164 KKV 166
>11_06_0146 +
20621730-20621865,20621947-20622026,20622600-20622686,
20622789-20622866,20622947-20623038,20623132-20623333,
20623644-20623734,20624163-20624221,20624413-20624561,
20624662-20624743,20624828-20625214
Length = 480
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 332 AHRVQRGAHTPRRGRLQTLHQVLQRLRRHNQGDAEQ 439
A RV+ + P R ++T H RL+RH G ++Q
Sbjct: 362 AKRVEDWSDIPSREEIRTAHAAAFRLKRHETGQSDQ 397
>04_04_1668 + 35217254-35218531
Length = 425
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 2 RNSARGGPAARLLRSVHGHRRQRDHAGAQGGGLHEHLR 115
R+ R G L HGH R+ G+ G G HLR
Sbjct: 200 RSFGRAGTTRDSLPHGHGHHRRSSSGGSSGSGSGSHLR 237
>12_02_0168 + 14827529-14828050
Length = 173
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -2
Query: 204 RCRAG--TPAASWTARWGGAACAG 139
RCR+G P ARWG AAC G
Sbjct: 28 RCRSGRSAPGGRRRARWGSAACVG 51
>10_07_0010 + 11772455-11772925
Length = 156
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = -2
Query: 204 RCRAG--TPAASWTARWGGAACAG 139
RCR+G P ARWG A C G
Sbjct: 28 RCRSGRSAPGGRHRARWGSATCVG 51
>02_03_0178 + 16019981-16020010,16020417-16020674
Length = 95
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 137 APAHAAPPQRAVHEAAGVPARQRPVRLAQRLHTGIRVCTTQLRW 268
AP H P Q AV G P P+R Q IRV QL+W
Sbjct: 35 APIHTVPLQ-AVAPPGGFPTTPLPIRQDQATGVDIRV-MQQLKW 76
>04_01_0486 - 6404315-6404333,6404803-6405260
Length = 158
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 2 RNSARGGPAARLLRSVHGHRRQRDHAGAQGGGLHEHLR-PADILRGAPAHAAPPQRAVHE 178
R+ RGG R + G R+ AQGGG + R ++ +P +PP R + +
Sbjct: 42 RSGGRGGGGGRRGGASGGRGRRGRQRAAQGGGGRQRARGGGEVAVVSPPGRSPPLRQIWQ 101
Query: 179 AAGVPARQRPVRLAQR 226
R+R R A+R
Sbjct: 102 ----EGRRRQGRRARR 113
>02_02_0542 -
11352655-11352759,11353320-11353496,11353589-11353699,
11355606-11355667,11355739-11355941,11357109-11357281
Length = 276
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +2
Query: 23 PAARLLRSVHGHRRQRDHAGAQGGGLHEHLRPADILRGAPAHAAPPQRAV 172
P R R GH+RQRD G R + G A PP R++
Sbjct: 12 PRTRKARGSTGHKRQRD-TTRSGEAARWERRCGQVGEGGSASLTPPARSI 60
>08_02_0233 +
14593639-14594468,14594480-14594986,14595362-14595856,
14596592-14596662,14597116-14597199,14597328-14597446,
14598029-14598109,14598397-14598411
Length = 733
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 213 RTGRCRAGTPAASWTARWGGAACAGAPRRI 124
R G C +G+ +W + G CA A R+
Sbjct: 140 RYGSCESGSSGGTWRLQLGSLPCAAATLRV 169
>06_03_0454 - 20968052-20969758
Length = 568
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 195 AGTPAASWTARWGGAACAGAPRRIS 121
AG P A W A WG A AP +S
Sbjct: 289 AGGPTAEWLAGWGPLARLAAPSCVS 313
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 8 SARGGPAARLLRSVHGHRRQRDHAGAQGGGLHEHLRPADILRGAPAHAAPPQRAVHEAAG 187
SA G AA+ R +++ H+G +G L P +G PA + AG
Sbjct: 42 SAAPGSAAQTGRRDRRRKKRSVHSGDEGHVLAVEGAPRATRKGRPASDKKKE------AG 95
Query: 188 VPARQRP 208
PAR+RP
Sbjct: 96 TPARERP 102
>06_01_0876 - 6712224-6712812,6713777-6715233
Length = 681
Score = 27.5 bits (58), Expect = 8.5
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = +2
Query: 83 AQGGGLHEHLRPADILRGAPAHAAPPQRAVHEAAGVPARQRPVRLAQRLHTGIRVCTTQL 262
AQGGG+ + R PA PP + EAAG+ R RL Q G+ + T
Sbjct: 15 AQGGGVAKEKRTTP----PPAKITPPSSSSSEAAGLSRR----RLLQSAGLGLGLGLTAA 66
Query: 263 RWSR*E 280
R +R E
Sbjct: 67 RPARAE 72
>05_01_0136 + 915140-915487,915781-916392
Length = 319
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 366 AADVFKHYIKCYNDYGDIIKATLSKARE-INKLNCALTMELAMQALFRDLLRRHATPHRQ 542
+A V +HY + Y + I++ L+K+ + + C LT+ + +A +D RR + +
Sbjct: 70 SAQVTRHY-RHYKENWKIVETALNKSGNGFDAIKCKLTISESEKATLKDRDRRLLS--KP 126
Query: 543 LPEFLELKEL 572
+ F E++EL
Sbjct: 127 IKYFHEMQEL 136
>04_03_0826 +
20103105-20103697,20104222-20104391,20104487-20104716,
20104825-20104933,20104967-20105154,20105818-20105919,
20106114-20106395,20106504-20106625,20106708-20107020,
20107096-20107329,20107477-20107767,20107975-20108286
Length = 981
Score = 27.5 bits (58), Expect = 8.5
Identities = 23/73 (31%), Positives = 32/73 (43%)
Frame = +2
Query: 8 SARGGPAARLLRSVHGHRRQRDHAGAQGGGLHEHLRPADILRGAPAHAAPPQRAVHEAAG 187
S+ P+A +L + G RR+ AGA GGG + +R + A A P A G
Sbjct: 7 SSSSVPSASILATGAGLRRRFSPAGAGGGGRAVAVAAGRPIRASAALLAAP--APRRRGG 64
Query: 188 VPARQRPVRLAQR 226
V R R +R
Sbjct: 65 VVVRAVFERFTER 77
>01_05_0098 -
18088331-18088376,18088703-18088935,18089078-18089203,
18089387-18089494,18089646-18089709,18090256-18090409,
18090551-18090671,18091095-18091472
Length = 409
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 23 PAARLLRSVHGHRRQRDHAGAQGG 94
P++ + H H ++R HAGA GG
Sbjct: 6 PSSEAAAAHHHHHQRRQHAGAAGG 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,185
Number of Sequences: 37544
Number of extensions: 279574
Number of successful extensions: 1408
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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