Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0994
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12476| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   5e-15
SB_31884| Best HMM Match : Rhabdo_M1 (HMM E-Value=0.36)                53   2e-07
SB_41241| Best HMM Match : HlyIII (HMM E-Value=1.4)                    30   1.2  
SB_8173| Best HMM Match : GreA_GreB_N (HMM E-Value=0.27)               29   2.8  
SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23)            29   2.8  
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)               28   6.5  
SB_2643| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_17491| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_12476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 4/83 (4%)
 Frame = +3

Query: 222 NDFIQEF-VFVQHNY---DGQDERRIEELHKRRNFLAAYCKLIVYNVAPIRRAADVFKHY 389
           +DF + F VF+  NY   D + + + EE+ ++RN LA +CKLI+YNV  +   + VF H 
Sbjct: 7   SDFSEAFTVFIYLNYCRPDDETDAKAEEMSRKRNLLAGFCKLIIYNVFEMPLVSSVFAHL 66

Query: 390 IKCYNDYGDIIKATLSKAREINK 458
           IK + ++GDIIK T+SK REI+K
Sbjct: 67  IKGFTNFGDIIKHTMSKCREISK 89


>SB_31884| Best HMM Match : Rhabdo_M1 (HMM E-Value=0.36)
          Length = 456

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
 Frame = +3

Query: 222 NDFIQEF-VFVQHNY---DGQDERRIEELHKRRNFLAAYCKLIVYNVAPIRRAADVFKHY 389
           +DF + F VF+  NY   D + + + EE+ ++RN LA +CKLI+YNV  +   + VF H 
Sbjct: 7   SDFSEAFTVFIYLNYCRPDDETDAKAEEMSRKRNLLAGFCKLIIYNVFEMPLVSSVFAHL 66

Query: 390 IKCYNDYGD 416
           IK + +  D
Sbjct: 67  IKEFLEVKD 75


>SB_41241| Best HMM Match : HlyIII (HMM E-Value=1.4)
          Length = 242

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 138 HLHTLHHPNEPSMKQLV---YQPDNDLCDLLNDFIQEFVFVQHNYD 266
           ++HT +     S++Q +   +QP N+  ++ + FI  FVF+ HN D
Sbjct: 52  YIHTRYRRPCLSVEQCIESMFQPHNETVNIWSHFIAAFVFLIHNSD 97


>SB_8173| Best HMM Match : GreA_GreB_N (HMM E-Value=0.27)
          Length = 488

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 276 ERRIEELHKRRNFLAAYCKLIVYNVAPIRRAADVFKHYIKC 398
           ERRI ++ K RN +A   K+ +   A IRR    F H I C
Sbjct: 142 ERRIADVQKSRNMIAREAKVELTGAAGIRRPLLNF-HCISC 181


>SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23)
          Length = 734

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 276 ERRIEELHKRRNFLAAYCKLIVYNVAPIRRAADVFKHYIKC 398
           ERRI ++ K RN +A   K+ +   A IRR    F H I C
Sbjct: 655 ERRIADVQKSRNMIAREAKVELTGAAGIRRPLLNF-HCISC 694


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 59  RRQRDHAGAQGGGLHEHLRPADILRGAPAHAAPPQRAVHEAAGVP 193
           RR RD +  +GGG   +   +   R A A  APP+R       +P
Sbjct: 455 RRHRDRSRERGGGRDRYRERSPSPRRAGAPPAPPKRKRESLWDIP 499


>SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)
          Length = 1066

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 150 LHHPNEPSMKQLVY---QPDNDLCDLLNDFIQEFVF 248
           +HH + P+ K LVY      +D C + ND   E  F
Sbjct: 669 IHHQDSPNRKMLVYAVLDDQSDTCFVTNDVCSELGF 704


>SB_2643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 9   RHEGDRLRAYCALCTDIVVNGTTPELKEEAYTSICDLLIFFAEHLHTLHHPNEPSMKQL 185
           RH+G+R+ A+    T I++  TT        +S+    + +  H H  H+ + PS   L
Sbjct: 12  RHKGERVLAFTITITTIIIIITT----SSPSSSLTPSSLSYQHHHHHHHYHHHPSSSLL 66


>SB_17491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 144 HTLHHPNEPSMKQLVYQPDNDLCDLLNDFIQEFVFV 251
           HT+ H N P++  +VY     +C  +N  I  F++V
Sbjct: 422 HTVIHTNLPTLHYIVYAWLPYVCLAVNSVINPFIYV 457


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,236
Number of Sequences: 59808
Number of extensions: 291397
Number of successful extensions: 976
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)