Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0994
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09795.1 68414.m01099 ATP phosphoribosyl transferase 2 (ATP-P...    31   0.44 
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    31   0.77 
At1g58080.1 68414.m06582 ATP phosphoribosyl transferase 1 (ATP-P...    31   0.77 
At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to ...    30   1.3  
At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem...    29   1.8  
At4g28670.1 68417.m04097 protein kinase family protein contains ...    27   7.1  
At1g15550.1 68414.m01870 gibberellin 3-beta-dioxygenase / gibber...    27   9.4  

>At1g09795.1 68414.m01099 ATP phosphoribosyl transferase 2
           (ATP-PRT2) identical to ATP phosphoribosyl transferase
           (AtATP-PRT2) [Arabidopsis thaliana] GI:6683619;
           supporting cDNA gi|6683618|dbj|AB025250.1|
          Length = 413

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 347 RGAHTPRRGRLQTLHQVLQRLRRHNQGDAE 436
           R A T R+G L+T+H++L+RL  H + + +
Sbjct: 284 RRALTERKGALETVHEILERLEAHLKANGQ 313


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 68  RDHAGAQGGGLHEHLRPADILRGAPAHAAPPQRAVHEA 181
           RD +G+ G G  E  R  +  RG P   + P R+ HEA
Sbjct: 671 RDSSGSSGWG-RERSRSPERFRGGPPSTSSPPRSFHEA 707


>At1g58080.1 68414.m06582 ATP phosphoribosyl transferase 1
           (ATP-PRT1) identical to ATP phosphoribosyl transferase
           GI:6683617 from [Arabidopsis thaliana]
          Length = 411

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 347 RGAHTPRRGRLQTLHQVLQRLRRHNQGDAE 436
           R A   R+G L T+H++L+RL  H + D +
Sbjct: 282 RRALNERKGALNTVHEILERLEAHLKADGQ 311


>At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to
           regulatory protein NPR1 (nonexpresser of PR genes 1,
           NPR1; noninducible immunity 1, Nim1; salicylic acid
           insensitive 1, Sai1) [Arabidopsis thaliana]
           SWISS-PROT:P93002
          Length = 593

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
 Frame = +3

Query: 312 FLAAYCKLIVYNVAPIRRAADVFKHYIKCYNDYGDIIKATLSKAREINKLNCALTMELAM 491
           +LAA   L   +V+ ++  ++ F+      +D+    K  LS  RE++   C L+   A 
Sbjct: 31  YLAAEQVLTGPDVSALQLLSNSFESVFDSPDDFYSDAKLVLSDGREVSFHRCVLS---AR 87

Query: 492 QALFRDLL---RRHATPHRQLPEFLELKELAKRFSV 590
            + F+  L   ++    +      LELKE+AK + V
Sbjct: 88  SSFFKSALAAAKKEKDSNNTAAVKLELKEIAKDYEV 123


>At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA11)
           identical to SP|Q9M2L4|ACAB_ARATH Potential
           calcium-transporting ATPase 11, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis
           thaliana}; strong similarity to calmodulin-stimulated
           calcium-ATPase [Brassica oleracea] GI:1805654
          Length = 1025

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
 Frame = +3

Query: 12  HEGDRLRAYCALCTDIVV---------NGTTPELKEEAYTSICDLLIFFA-EHLHTL 152
           H G ++RA+C   ++IV+         NG +  L EE   SI D++  FA E L TL
Sbjct: 562 HSGGKVRAFCKGASEIVLKMCEKVVDSNGESVPLSEEKIASISDVIEGFASEALRTL 618


>At4g28670.1 68417.m04097 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 625

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 294 LHKRRNFLAAYCKLIVYNVAPIRRAADVFKHYIKC-YNDYGDIIKATLSKAREI 452
           + K    +     L+ +  + +++A + F    K     YG++ K TLS  REI
Sbjct: 303 IEKESESICTESHLMSFEYSTLKKATNNFNESCKLGVGGYGEVFKGTLSDGREI 356


>At1g15550.1 68414.m01870 gibberellin 3-beta-dioxygenase /
           gibberellin 3 beta-hydroxylase (GA4) identical to
           gibberellin 3 beta-hydroxylase [GI:2160454]
          Length = 358

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 489 MQALFRDLLRRHAT--PHRQLPEFLELKEL 572
           M A+  D+ R H    PH  +P+F  L+EL
Sbjct: 1   MPAMLTDVFRGHPIHLPHSHIPDFTSLREL 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,927,482
Number of Sequences: 28952
Number of extensions: 182945
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)