Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0993
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   4.5  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   7.8  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    25   7.8  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 482 FFIEFVYNLELVQIKTAA*VSVFIICNN 399
           F   FVY+ E+V   T   V  +I+CN+
Sbjct: 557 FEFSFVYDNEIVLFDTCYMVCTYIVCNS 584


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 138 MYYDFVKNIIIYKK 97
           +YYD VKN+I Y+K
Sbjct: 841 LYYDVVKNMIDYRK 854


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 215 WVIGVLVRIPNFFRKKNIAYV 277
           W++ VL+RI N F   ++ Y+
Sbjct: 366 WILRVLLRIRNLFEHHDVYYI 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,542
Number of Sequences: 5004
Number of extensions: 37091
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)