Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0992
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_38025| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)                    27   8.6  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 145 LKVNFIFRFTDIIQIVTYLESKKNIYSV*FLHCKFVHSSGNY 270
           +K+N  + F D I +  YL+  ++  +V  LH   VHS  N+
Sbjct: 445 VKINDRYEFYDKIDLDRYLQELEDTPAVYTLHAVLVHSGDNH 486


>SB_38025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 480 NKFCECSLKMVLTSFYFYFR*TF 548
           NK C+C  +MV+  + FY+R  F
Sbjct: 101 NKGCQCERRMVIAKWQFYYRKMF 123


>SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)
          Length = 504

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 78  QCTCIYPHKITVLYLSIPRARAPP 7
           Q  C+YP   +V+Y++ P A  PP
Sbjct: 161 QIQCLYPDTDSVIYIASPAALDPP 184


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/44 (27%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +1

Query: 343  ILYFIIVSL*FLVVQRAVT-LYIV*YFISYILVLIIIHMYF*LV 471
            I+ F+I+ + F+V+   V  ++IV  FI  ++++I++ + F ++
Sbjct: 2862 IIVFVIIVIIFIVIIFVVVIIFIVIIFIIVVIIIIVVVIIFVII 2905


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,314
Number of Sequences: 59808
Number of extensions: 270089
Number of successful extensions: 581
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)