Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0991
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    27   2.5  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   4.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   4.4  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   4.4  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   5.9  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.7  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    25   7.7  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   7.7  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.7  

>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 340 YTSSAAHDFPVPVHLTAVIDTCQESKMVGD--RTFLDN 233
           YTS    D PVPV    +I  C+  +M  +    F+DN
Sbjct: 235 YTSLVEEDDPVPVVTDTIISRCRRCRMYINPFSIFIDN 272


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 355 RIHSIYTSSAAHDFPVPVHLTAVID 281
           R +SI +SS  H  P  VH+TAV+D
Sbjct: 441 RYYSISSSSVVH--PDKVHVTAVVD 463


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 321  CAALDVYIECIRHQCSTV 374
            C A+ +Y +C+RH  S+V
Sbjct: 1399 CLAIHIYYQCLRHLSSSV 1416


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 422 WTILNYYFFTCVRYLKLCTYYY 487
           WT+  ++ F C   L   TY+Y
Sbjct: 110 WTLFGFWCFVCTLALIFLTYFY 131


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 7/26 (26%), Positives = 21/26 (80%)
 Frame = +3

Query: 192 FLKLTVVFAFCLNTLSKNVRSPTILD 269
           +L +T+V+ +C++  +K+++ P++L+
Sbjct: 573 YLVITIVYKWCIDWKAKDLQPPSLLN 598


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 395 SERYYFFYVWTILNYYFFTCVRYLKLCTYYYL 490
           S   +FF+ +TI  Y++  C+  + L  +Y L
Sbjct: 57  SHTLHFFHHFTIACYHYSLCLSLVALLLFYTL 88


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 336 HPVLHTTSRCLFT*QLSLTPVKNPKW 259
           HP+   T RC+F   L+    + P W
Sbjct: 262 HPMPQDTKRCVFVGNLAFEAEEEPLW 287


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -2

Query: 428 LSKHKKNNIAPIYKITRNNSTALMAYTLYIYIQCCTRLPG-ACSLDSCH*HLSRIQNGGR 252
           L   ++ + A   ++ +  +   + Y +  Y +    L G AC LD    ++ ++ +G R
Sbjct: 155 LYNEEEESDAATRRLMKRQNQRQIQYCIQRYNELVRDLIGKACDLDPRRKNVVKLSDGER 214

Query: 251 SNVFGQCVQAKRENDRK 201
            N   +  + + E DR+
Sbjct: 215 YNSLQEASRKQSERDRR 231


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 322 VQHWMY-I*SVYAISAVLLFRVILYIGAILFFLC 420
           V +W + I S    +AVL F   L I  ++FFLC
Sbjct: 574 VFYWFFKISSSSLATAVLYFGYSLLISVLVFFLC 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,482
Number of Sequences: 5004
Number of extensions: 50786
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)