Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0991
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0502 - 19746100-19746185,19746745-19750474                       28   4.5  
11_06_0050 + 19631164-19631987,19632103-19634023                       28   6.0  
07_03_1602 + 28068628-28068771,28069779-28070176,28070768-280710...    28   6.0  

>12_02_0502 - 19746100-19746185,19746745-19750474
          Length = 1271

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
 Frame = -3

Query: 442  IIIKYCPNIKKIISLRYT--KLL----GITVLH*WRIHSIYTSS 329
            +I+++CPN+KK+ +L  T  KL+    G+ VL   R+H  Y S+
Sbjct: 883  LIVRWCPNLKKLPALPCTLEKLIIRHVGLAVLP--RLHQAYAST 924


>11_06_0050 + 19631164-19631987,19632103-19634023
          Length = 914

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 457 NACKKIIIKYCPNIKKIISLRYTKLLGITV 368
           + C K+  ++C +I K+  LRY +L G ++
Sbjct: 582 SGCDKVENQHCKDICKLFHLRYLRLYGTSI 611


>07_03_1602 +
           28068628-28068771,28069779-28070176,28070768-28071032,
           28071101-28071174,28071247-28071346
          Length = 326

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 253 DRTFLDNVFKQNAKTTVSLRNYNWTVL 173
           D+  LDN++ + AK+ V+++ YN T L
Sbjct: 52  DKVVLDNLYGEIAKSVVTIKRYNRTGL 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,434,230
Number of Sequences: 37544
Number of extensions: 261631
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)