Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0991
(567 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 31 0.87
SB_38459| Best HMM Match : DUF948 (HMM E-Value=0.63) 30 1.1
SB_3479| Best HMM Match : PAH (HMM E-Value=4.7) 29 2.6
SB_28526| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_52500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_20194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 356 PSVQYCYSE*FCISERYYFFYVWTILNYYFFTCVRYLKLCTYY 484
P ++YCY +C YY+ Y + Y ++ C Y C YY
Sbjct: 465 PVLRYCYCYCYC----YYYCYCYCYY-YCYYYCYCYCYYCCYY 502
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 368 YCYSE*FCISERYYFFYVWTILNYYFFTCVRYLKLCTYYY 487
YCY +C YY+ Y + Y ++ C Y C YYY
Sbjct: 473 YCYCYYYCYCYCYYYCYYYCYC-YCYYCC--YYCYCYYYY 509
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = +2
Query: 311 REVVCSTGCIYRVYTPSVQYCYSE*FCISERYYFFYVWTILNYYFFTCVRY 463
R C C Y Y YCY +C Y +Y + Y+ + C Y
Sbjct: 468 RYCYCYCYCYYYCYCYCYYYCYYYCYCYC-YYCCYYCYCYYYYHHYYCCYY 517
>SB_38459| Best HMM Match : DUF948 (HMM E-Value=0.63)
Length = 276
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 335 CIYRVYTPSVQYCYSE*FCISERYY--FFYVWTILNYYFFTCVRYLKLCTYYY 487
C+ R Y V+Y Y CI RYY F + + Y+ CVRY K+C YY
Sbjct: 20 CV-RYYKVCVRY-YK--VCI--RYYKVCFRYYKVCFRYYKVCVRYYKVCVRYY 66
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 335 CIYRVYTPSVQYCYSE*FCISERYY--FFYVWTILNYYFFTCVRYLKLCTYYY 487
C+ R Y V+Y Y CI RYY F + + Y+ CVRY K+C YY
Sbjct: 62 CV-RYYKVCVRY-YK--VCI--RYYKVCFRYYKVCFRYYKVCVRYYKVCVRYY 108
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 341 YRVYTPSVQYCYSE*FCISERYYFFYV--WTILNYYFFTCVRYLKLCTYYY 487
Y+V + C+ + + RYY V + + Y+ CVRY K+C YY
Sbjct: 80 YKVCFRYYKVCFRY-YKVCVRYYKVCVRYYKVCVMYYKVCVRYYKVCVMYY 129
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 401 RYY--FFYVWTILNYYFFTCVRYLKLCTYYY 487
RYY F + + Y+ CVRY K+C YY
Sbjct: 43 RYYKVCFRYYKVCVRYYKVCVRYYKVCVRYY 73
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 440 YFFTCVRYLKLCTYYY 487
Y+ CVRY K+C YY
Sbjct: 9 YYKVCVRYYKVCVRYY 24
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 440 YFFTCVRYLKLCTYYY 487
Y+ CVRY K+C YY
Sbjct: 16 YYKVCVRYYKVCVRYY 31
>SB_3479| Best HMM Match : PAH (HMM E-Value=4.7)
Length = 222
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 335 CIYRVYTPSVQYCYSE*FCISERYYFFYV--WTILNYYFFTCVRYLKLCTYYY 487
C+ R Y V+Y + + RYY V + + Y+ CVRY K+C YY
Sbjct: 27 CV-RYYKVCVRY-----YKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVMYY 73
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 341 YRVYTPSVQYCYSE*FCISERYYFFYV--WTILNYYFFTCVRYLKLCTYYY 487
Y+V + C + + RYY V + + Y+ CVRY K+C YY
Sbjct: 73 YKVCVKYYKVCVMY-YKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 122
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 335 CIYRVYTPSVQYCYSE*FCISERYYFFYV--WTILNYYFFTCVRYLKLCTYYY 487
C+ R Y V+Y + + RYY V + + Y+ CVRY K+C YY
Sbjct: 90 CV-RYYKVCVRY-----YKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 335 CIYRVYTPSVQYCYSE*FCISERYYFFYV--WTILNYYFFTCVRYLKLCTYYY 487
C+ R Y V+Y + + RYY V + + Y+ CVRY K+C YY
Sbjct: 97 CV-RYYKVCVRY-----YKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 143
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 335 CIYRVYTPSVQYCYSE*FCISERYYFFYV--WTILNYYFFTCVRYLKLCTYYY 487
C+ R Y V+Y + + RYY V + + Y+ CVRY K+C YY
Sbjct: 104 CV-RYYKVCVRY-----YKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 150
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 401 RYYFFYV--WTILNYYFFTCVRYLKLCTYYY 487
RYY V + + Y+ CVRY K+C YY
Sbjct: 8 RYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 38
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 335 CIYRVYTPSVQYCYSE*FCISERYYFFYV--WTILNYYFFTCVRYLKLCTYYY 487
C+ R Y V+Y + + RYY V + + Y+ CV+Y K+C YY
Sbjct: 41 CV-RYYKVCVRY-----YKVCVRYYKVCVRYYKVCVMYYKVCVKYYKVCVMYY 87
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 440 YFFTCVRYLKLCTYYY 487
Y+ CVRY K+C YY
Sbjct: 2 YYKVCVRYYKVCVRYY 17
>SB_28526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 2 CRNSARGNNISNKNTILCQSYLSKIRTIYYEHFIR 106
C A + NK + LC+ +S ++T YY +R
Sbjct: 54 CPKRAGPRALKNKRSELCKKLMSSLKTTYYTRLLR 88
>SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 630
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 395 IYKITRNNSTALMAYT-LYIYIQCCTRLPGACSLDSCH*HLSRIQNGGRSNVF 240
+YK+ +N + Y L+I + CT GA DSC H + RS F
Sbjct: 497 LYKLLDSNMVCIARYVILWITLTLCTTFIGANEEDSCIFHTNSTSGSIRSPNF 549
>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -2
Query: 515 VCPGNLRSLNNSRYTTLSNERM*KNNN*VLSKHKKNNIAPIYKITRNNSTALMAYTL 345
V P NL+ NN R + + NNN + +K N+ Y I N++ YT+
Sbjct: 51 VQPANLKQRNNKRNSNYTTNNNHSNNNYTID-NKDNSSNNNYTINNKNNSRNNNYTI 106
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +2
Query: 341 YRVYTPSVQYCYSE*FCISERYYFFYVWTILNYYFFTCVRYLKLCTYYY 487
Y Y Y Y + YY++Y + YY++ Y YYY
Sbjct: 112 YYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYY 160
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +2
Query: 341 YRVYTPSVQYCYSE*FCISERYYFFYVWTILNYYFFTCVRYLKLCTYYY 487
Y Y Y Y + YY++Y + YY++ Y YYY
Sbjct: 113 YYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 161
>SB_52500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 303
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 303 TGTGKSCAALDVYIECIRHQCSTVIPSNFVYR 398
+GTGK C+ + C+ H S + S F +R
Sbjct: 188 SGTGKKCSMDRSFFVCVNHLGSVICQSLFFFR 219
>SB_20194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 846
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +2
Query: 248 SISHHFGFLTGVNDSCQVNRHREVVCSTGCIYRVYTPSVQYCYS-----E*FCISERYYF 412
++ H G + G C VC T +Y+ YT S C+S + + ER+ F
Sbjct: 552 TVDHVLGMIAGAEKRC-------TVCGTQLLYQGYTKSHPQCFSIDWLDDVYRTKERFEF 604
Query: 413 FYVWTILNYY 442
F + +Y
Sbjct: 605 FVGLALRRHY 614
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,640,866
Number of Sequences: 59808
Number of extensions: 345579
Number of successful extensions: 1030
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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