Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0991
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro...    28   3.8  
At5g54560.1 68418.m06792 hypothetical protein contains Pfam prof...    28   5.0  
At5g39710.1 68418.m04808 pentatricopeptide (PPR) repeat-containi...    27   6.6  
At5g37450.1 68418.m04507 leucine-rich repeat transmembrane prote...    27   6.6  
At3g42320.1 68416.m04373 hypothetical protein various predicted ...    27   6.6  

>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
           protein
          Length = 210

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 281 VNDSCQVNRHREV-VCSTGCIYRVYTPS--VQYCYSE*FCISERYYFFYVWT 427
           +ND  QV+   E   C +     VY P   + +C S+ + + +  YF+Y W+
Sbjct: 42  LNDVTQVSGALEYEFCDSSSPKAVYNPGHDISWCGSKGWSVPQESYFYYRWS 93


>At5g54560.1 68418.m06792 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 360

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 238 PKTFDLPPFWILDRCQ*QLSSEQAPGS 318
           PK   LPPF  L RCQ Q+ +  A  S
Sbjct: 118 PKRISLPPFVTLPRCQTQIVTNVAMSS 144


>At5g39710.1 68418.m04808 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 747

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 346 SIYTSSAAHDF-PVPVHLTAVIDTCQESKMVGDRTFLDNVFKQNAKTTVSLRNYNWTVL 173
           SI   + AH F P  +   AV+D    SK   + +F +NVFK+  ++ VS   + + +L
Sbjct: 155 SIVHLAQAHGFMPGVLSYNAVLDATIRSKR--NISFAENVFKEMLESQVSPNVFTYNIL 211


>At5g37450.1 68418.m04507 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 935

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 388 LYIGAILFFLCLDNT*LLFFYMRSLLK 468
           + IGAI FFL L +  L+FF  RS  K
Sbjct: 542 IIIGAIAFFLVLSSLALVFFIKRSKRK 568


>At3g42320.1 68416.m04373 hypothetical protein various predicted
           Helicases, Arabidopsis thaliana
          Length = 541

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 270 NPKWWEIERFWTMCSSKTRKRP 205
           NPKW EI RF+   + K+  RP
Sbjct: 168 NPKWHEIVRFYKARNLKSEDRP 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,566,184
Number of Sequences: 28952
Number of extensions: 234651
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)