Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0989
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 377 CLCIFPVLMDHWLYHLIR 324
           C C+  +L+   LYH++R
Sbjct: 609 CRCVKGILLKSGLYHVLR 626


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 542 VQVNTSGEQAKSGLEPLETTKAVEHILEN 628
           +QVN SG+     +E  E       +L+N
Sbjct: 182 IQVNVSGDNVPQPIESFEAAGLRNIVLDN 210


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 407 TNKINKLLGSPGLFMVETVDSEKLADNLN 493
           +NK+  +L  PG F  E    +++ D+ N
Sbjct: 122 SNKMTVILTPPGRFFCEVRPIKRVKDSTN 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,128
Number of Sequences: 438
Number of extensions: 3230
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)