Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0988
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   3.2  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   4.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   4.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   7.4  
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2...    25   7.4  

>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 260 IIFVEKMRKLFFFVNFSPEKKLCL*IKFY 346
           II+ EK RK  +F N SPE    L  K++
Sbjct: 442 IIYKEKKRKWIYFTNKSPEMVSYLREKYF 470


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 318 FSGEKLTKKNNFLIFSTKIIVFFSYGNIRLSTT 220
           FS E L+KKN FLI   +    F   N+ +ST+
Sbjct: 833 FSFEPLSKKNRFLINLFRFSFSFILYNLLISTS 865


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 257  CFFRMATLDYPRLVQVKHLEILSKS 183
            CFFR+    Y RL ++K+LE ++ S
Sbjct: 1012 CFFRLFHTLYSRLEEIKNLEQMAYS 1036


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 502 ELHHLRFEESSRPRYPAA--HLHVHGIPSSGSEFAADPTAHQQP 377
           E  HLR +ES   + P+    L    +PS  S  +   T HQQP
Sbjct: 767 ETKHLR-KESIPSKQPSGGQQLRQESLPSQQSSESKQSTQHQQP 809


>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
           Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 421 NLESHEHEGAQQGSAVGTTLQNADDATLTAETLFSEIQ 534
           N+E+   + A +G + G  L    D  L  ETL S ++
Sbjct: 268 NIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVK 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,377
Number of Sequences: 5004
Number of extensions: 36075
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)