Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0988
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = -1

Query: 495 IICVLKSRPDRATLLRTFMFMGFQVLAPNSPLTPQHINNPNYIFLHY 355
           I+C + S     + +  F  +GF       P+    ++ P   FL Y
Sbjct: 317 IVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGLAFLVY 363


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 434 MNMKVRSRVARSGRLFKTQMMQLL 505
           ++MK++  V +SGR+  TQ  + L
Sbjct: 353 VSMKIKQNVPQSGRVNNTQRNEYL 376


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/47 (23%), Positives = 18/47 (38%)
 Frame = -1

Query: 495 IICVLKSRPDRATLLRTFMFMGFQVLAPNSPLTPQHINNPNYIFLHY 355
           I+C + S     + +  F  +GF       P+     + P   FL Y
Sbjct: 370 IVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFLVY 416


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 294 KNNFLIFSTKIIVFFSYGNIRLSTTR 217
           +N  L+   KI++   YG+I  S T+
Sbjct: 11  QNVVLVKKVKIVLLIFYGSIMFSMTQ 36


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 321 FFSGEKLTKKNNFLIF 274
           FF+ E L K N+ LIF
Sbjct: 170 FFNSEVLQKANHALIF 185


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 321 FFSGEKLTKKNNFLIF 274
           FF+ E L K N+ LIF
Sbjct: 170 FFNSEVLQKANHALIF 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,213
Number of Sequences: 438
Number of extensions: 2419
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)