Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0988
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40470.1 68418.m04908 expressed protein                             27   6.3  
At5g52270.1 68418.m06487 vesicle transport protein-related simil...    27   8.3  
At3g61810.1 68416.m06937 glycosyl hydrolase family 17 protein si...    27   8.3  

>At5g40470.1 68418.m04908 expressed protein
          Length = 496

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 454 QGSAVGTTLQNADDATLTAETLFSE 528
           +G  +GTT   +D+  L AET+FS+
Sbjct: 87  RGVTIGTTPSRSDEEHLKAETIFSD 111


>At5g52270.1 68418.m06487 vesicle transport protein-related similar
           to vesicle trafficking protein sec22b [Mus musculus]
           GI:1907386
          Length = 214

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 287 TFSFFPQK*SCFFRMATLDYPRLVQVKHLEILSKSVFKM 171
           +F F  +K  C+  ++   YPR +   +L+ L+K + K+
Sbjct: 63  SFHFLVEKKICYIALSDSSYPRKLLFNYLQNLNKELDKL 101


>At3g61810.1 68416.m06937 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]; contains Pfam profile PF00332: Glycosyl
           hydrolases family 17
          Length = 375

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 215 ERVVDNLMLPYEKNTII 265
           E ++ N +LPY KNTII
Sbjct: 124 ESIIRNFILPYHKNTII 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,809,628
Number of Sequences: 28952
Number of extensions: 176434
Number of successful extensions: 332
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)