Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0987
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.2  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   7.4  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   7.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 276 GTYDILISN*KEVPLLVAKFDAGFRHFLHRGRHV 175
           G +D+ + + + V  L     A F    HRG H+
Sbjct: 183 GAFDVTLESGERVTFLDTPGHAAFISMRHRGAHI 216


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +1

Query: 310 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 489
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 490 YRY 498
           + Y
Sbjct: 500 FDY 502


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 352 KEYRVKVEKELREICYDV 405
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 352 KEYRVKVEKELREICYDV 405
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 2   AGTREKLILCLNLLV 46
           A + EK+ LC+N+L+
Sbjct: 261 ADSGEKIALCINILL 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,762
Number of Sequences: 438
Number of extensions: 2696
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)