Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0985
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     29   0.32 
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    29   0.43 
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    27   1.7  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    26   3.0  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   7.0  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   7.0  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   9.2  
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|...    25   9.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.2  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 250 RKRNNQGLHALKTPKYKFLTKEELELEIA 336
           RK+ N  L+ +KTPKY  LTK  L    A
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTA 314


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 247 FRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADVLLHIPPV-LKIHKPIDEVLSRD 423
           F++  N  LH++      FL  ++LE +  +A E+ +VLL+      +  + IDE    D
Sbjct: 273 FQRLQNSSLHSI------FLDPKQLEQKAQEAEERKNVLLNFDRTSAQRTRIIDEAADFD 326

Query: 424 PALIGYDT 447
           P  +  DT
Sbjct: 327 PTSLASDT 334


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 34  LKCLYCYKKIATKHVKTL--IIKYEPCVLVISNRKLNI 141
           + CLYCY KI    ++ +  + +    V++  N KLN+
Sbjct: 238 INCLYCYSKIDAVSLEEVDRLARLPKSVVISCNMKLNL 275


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 34  LKCLYCYKKIATKHVKTLIIKYEPCVLVISNRKLNIVPSFYDGEQD 171
           L+CL        + +  L+ K +PC  V+    + IV SFY    D
Sbjct: 192 LECLSQSTYNVERLISLLLSKKQPCDFVVREVLVQIVHSFYKAHLD 237


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 125 LDITRTHGSYFIINVLTCFVA 63
           L ++R H  YFI  VL CF A
Sbjct: 86  LGLSRLHVFYFIRGVLACFSA 106


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -2

Query: 290 GVLRACRP*LFLLRKTLVKSGRVNLFNRFCTFGVKNFGAGSCSPS*NDGTMFNFRL 123
           G+    RP + L  +   + G  ++++ +  F V +   G C  +  D   F FRL
Sbjct: 385 GIASLARPKVCLFVRNGARLGPTSIYHAWKAFDVDSTIGGMCGKTSIDTGKFGFRL 440


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +2

Query: 224 LGQILLKFSARETIKVYMPLKLPNISFSRKKSLNWKLLKLMKKPMCF 364
           +G +     AR  ++V+  +  PN +    +  NW  +++M   +CF
Sbjct: 372 VGALYTCLVARAELEVHSTVPEPNDAIENPEIPNWYCIQVMWPVVCF 418


>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 177

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 82  TLIIKYEPCVLVISNRKLNIVPSFYDGEQDPAPKFFT 192
           TL +    C    + + LN++    DG   PA +FFT
Sbjct: 69  TLCVASRTCAPKYAKQALNLMKVPIDGSLKPAIEFFT 105


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 52   YKKIATKHVKTLIIKYE---PCVLVI-SNRKLNIVPSFYDGEQDPAPKFFTPNVQNLLK 216
            YK +    ++ + I  E   P +++  S++ L+I+PS Y G+      F   + QN +K
Sbjct: 3480 YKNLTDYSLENIYIIQENKSPLLIIDPSSQILDILPSLYKGKASDLISFSNKSFQNQIK 3538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,434
Number of Sequences: 5004
Number of extensions: 47712
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)