Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0985
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38404| Best HMM Match : ComC (HMM E-Value=2.7) 74 8e-14
SB_18402| Best HMM Match : ComC (HMM E-Value=2.7) 74 8e-14
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2) 30 1.4
SB_40387| Best HMM Match : GrpE (HMM E-Value=0) 28 5.5
SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_21690| Best HMM Match : fn2 (HMM E-Value=3.4) 27 7.2
SB_55470| Best HMM Match : Nucleoplasmin (HMM E-Value=4.8) 27 9.6
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18) 27 9.6
SB_38574| Best HMM Match : WW (HMM E-Value=4.9) 27 9.6
>SB_38404| Best HMM Match : ComC (HMM E-Value=2.7)
Length = 237
Score = 73.7 bits (173), Expect = 8e-14
Identities = 40/114 (35%), Positives = 62/114 (54%)
Frame = +1
Query: 184 FFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADVL 363
F +V +L+RLT D K+F R AL+ Y+ +T EEL A +A +
Sbjct: 14 FNDESVNTILRRLTGCDVEKIFSNRKQ----ALEVHAYQLMTDEELLAAEEDAESRARSM 69
Query: 364 LHIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDG 525
L +PPV++ + I+EV+ D L GYD++ +FTDI+ + R I+ R+ DG
Sbjct: 70 LEMPPVMEEREEINEVIGTDERLAGYDSANLIFTDISMSATDRTRNIVVREPDG 123
>SB_18402| Best HMM Match : ComC (HMM E-Value=2.7)
Length = 237
Score = 73.7 bits (173), Expect = 8e-14
Identities = 40/114 (35%), Positives = 62/114 (54%)
Frame = +1
Query: 184 FFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADVL 363
F +V +L+RLT D K+F R AL+ Y+ +T EEL A +A +
Sbjct: 14 FNDESVNTILRRLTGCDVEKIFSNRKQ----ALEVHAYQLMTDEELLAAEEDAESRARSM 69
Query: 364 LHIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDG 525
L +PPV++ + I+EV+ D L GYD++ +FTDI+ + R I+ R+ DG
Sbjct: 70 LEMPPVMEEREEINEVIGTDERLAGYDSANLIFTDISMSATDRTRNIVVREPDG 123
>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
Length = 356
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +1
Query: 202 QNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADVLLHIPPV 381
+N+L + TR R+ + +G LK+ K+ T + ++ + K +++H PP+
Sbjct: 99 ENVLNK-TRDSSKNRTRRASEKGSKKLKSRKHGLPTLHAEKDKVENGSRKNSIVIHRPPI 157
Query: 382 LKIHKPIDEVLSRDPALI 435
I+ P EV R ++
Sbjct: 158 --IYHPPPEVYHRPDIVV 173
>SB_40387| Best HMM Match : GrpE (HMM E-Value=0)
Length = 328
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/41 (26%), Positives = 27/41 (65%)
Frame = +2
Query: 248 SARETIKVYMPLKLPNISFSRKKSLNWKLLKLMKKPMCFFT 370
+ R+T++ P+ +S +++L+++LL+ ++KP CF +
Sbjct: 92 TGRKTLEKLFPVNTA-VSSLAEENLSYRLLETLRKPPCFLS 131
>SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Frame = +1
Query: 262 NQGLHALKTPKYKFLTKEELELEIAKANEKADVLL-------HIPPVLKIHKPIDE 408
++G H L K + ++E E EIA A +KA+V+L + PPVLKI + ID+
Sbjct: 97 SRGYHIL-LEKPMSVEEKECE-EIAMACQKANVILAVCHVLRYFPPVLKIKEIIDQ 150
>SB_21690| Best HMM Match : fn2 (HMM E-Value=3.4)
Length = 100
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 40 CLYCYKKIATKHVKTLIIKYEPCVLVISNRKLNIVPSFYDGEQDPAPKFFT 192
CL+C+++ + ++ KY PC +R +I S +D E D P T
Sbjct: 51 CLWCFRQTGHRVIRFQKKKYAPC----EDRTHDIQISTFDYETDALPTALT 97
>SB_55470| Best HMM Match : Nucleoplasmin (HMM E-Value=4.8)
Length = 230
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 114 SYIQSKIEHCTIILRWRTRPGSKVFYTKCTESIKEIDSA 230
+Y+ + HC I+ W T S+VF T T ++ I A
Sbjct: 87 TYLGLPMHHCASIITWVTPMESRVFQTTLTVAMVGIAPA 125
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 199 VQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELE 324
V+ L KRL R FRK+ Q A K+ K + KEE E
Sbjct: 968 VEKLSKRLNRVKIKNKFRKKTKQS--ARKSRKIRLKWKEEQE 1007
>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
Length = 1022
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 114 SYIQSKIEHCTIILRWRTRPGSKVFYTKCTESIKEIDSA 230
+Y+ + HC I+ W T S+VF T T ++ I A
Sbjct: 879 TYLGLPMHHCASIITWVTPMESRVFQTTLTVAMVGIAPA 917
>SB_38574| Best HMM Match : WW (HMM E-Value=4.9)
Length = 256
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = -1
Query: 198 IWCKKLWSRV-----LFAIVK*WYNVQFSIGYN*NARLIFYY*CFNMLRCNFFVTVK 43
I C++ SR+ LF I+K +++ GYN ++ Y N R N FVTVK
Sbjct: 196 IACQRFVSRIKPENPLFPIIK-GFHITHDSGYNLRSKSTSYQRPTNTSRFNKFVTVK 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,567
Number of Sequences: 59808
Number of extensions: 330080
Number of successful extensions: 756
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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