Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0984
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 50 3e-07
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 49 6e-07
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 42 7e-05
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 34 0.014
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 30 0.23
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 29 0.69
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.6
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 27 2.1
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 26 4.9
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1... 26 4.9
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 50.0 bits (114), Expect = 3e-07
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +3
Query: 33 ARAREVAQSYNVPFVETSAKTRMGVDDAFYTLVREIRKDKVSRDKKFKGKK 185
A ++A+S + +VETSAK R+ V++AFY+LVR IR+ S +K F+ K+
Sbjct: 134 AEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKGFQNKQ 184
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 48.8 bits (111), Expect = 6e-07
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +3
Query: 36 RAREVAQSYNVPFVETSAKTRMGVDDAFYTLVREIRKDKVSRDKKFKGK 182
+ + +A V F+E SAKT + VD+AF+TL REI+K K+ + +F +
Sbjct: 136 QGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQ 184
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 41.9 bits (94), Expect = 7e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +3
Query: 39 AREVAQSYNVPFVETSAKTRMGVDDAFYTLVREIRK 146
A+E A S N+PF+ETSAK V+ AF T+ R+I++
Sbjct: 136 AKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKE 171
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 34.3 bits (75), Expect = 0.014
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +3
Query: 36 RAREVAQSYNVPFVETSAKTRMGVDDAFYTLVREIRKDKVSRDKK 170
+A+ VA S N P+VE SAK GV++ F V K S KK
Sbjct: 154 QAQSVALSMNAPYVECSAKENTGVNEVFQLAVGLTIKKSFSFSKK 198
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 39 AREVAQSYNVPFVETSAKTRMGVDDAFYTLVREI 140
A+ A N+ F+ETSA V++AF T++ EI
Sbjct: 138 AQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 28.7 bits (61), Expect = 0.69
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 9 QEFGTRDMARAREVAQSYNVPFVETSAKTRMGVDDAFYTLVREI-RKDKVSR 161
QE + A A A N+ F ETSAKT V++ F + +++ +DK+++
Sbjct: 134 QERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLPLEDKLNQ 185
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 203 FVNVTWFLPFEFLVSA--DFIFAYLPHERVESVVNSHACFGRCFDERNIIALRHL 45
F+NVT+ L + + DF+F Y + + V N+ R F ++IAL L
Sbjct: 126 FINVTYILKTRVKIPSQPDFVFEYPLNLKRSIVTNADKIAQRLFPPTSLIALLEL 180
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 66 VPFVETSAKTRMGVDDAFYTLVREIRKDKVSRDKKFKGKKPRHV 197
+P+ ETSAK + V +AF T+ + ++ S D P H+
Sbjct: 151 IPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHL 194
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 212 FNYFVNVTWFLPFEFLVSADFIFAYLPHERVESVVNSHACFGRCF 78
+NYF N++ + + D I L + + S V++ FG+CF
Sbjct: 518 YNYFTNISTDRTY---YTEDMIQQLLTNGLISSTVDNDTYFGQCF 559
>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 27 DMARAREVAQSYNVPFVETSAKTRMGVDDAFYTLVREIRKDKVS 158
DM+ + S + +ET + GV+D YT R I+ K+S
Sbjct: 143 DMSAENAMELSSSTNLLETLQEKYFGVEDVLYTSKRIIKSLKLS 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,677
Number of Sequences: 5004
Number of extensions: 53381
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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