Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0984
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.3  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 378 KKTGCVTFRKQYHRLYYTQTDMLPIVRVC 464
           KK  C  +RK Y+ + Y +   +P+   C
Sbjct: 97  KKLYCNNYRKLYYNINYIEQIPIPVPIYC 125


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 150 KVSRDKKFKGKKPR 191
           K  RDKK   KKPR
Sbjct: 428 KKGRDKKSTSKKPR 441


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 13  NSARGTWREHE 45
           NSA G W EH+
Sbjct: 325 NSAIGCWNEHQ 335


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 13  NSARGTWREHE 45
           NSA G W EH+
Sbjct: 325 NSAIGCWNEHQ 335


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 13  NSARGTWREHE 45
           NSA G W EH+
Sbjct: 322 NSAVGCWNEHQ 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,414
Number of Sequences: 438
Number of extensions: 4104
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)