Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0983
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   0.90 
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    26   3.6  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   3.6  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    26   3.6  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   3.6  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    26   4.8  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    26   4.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.8  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   6.3  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   6.3  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    25   8.4  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 279 KRRQSDQDETYVSEEEDIHSQKQSQRQSYVLKLFDRSVD 395
           K ++ D DE +  EEEDI+  +   R   +L L + S++
Sbjct: 831 KPQEFDHDEYFSQEEEDIYRPENLIRNHQILGLMEGSLE 869


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 456 GLQSRLCRSDREGNPHQTVTSQHSYRTV*EHMTAAGIVFVSE 331
           G+  RLC     GNP     S++S   V     A GIV +++
Sbjct: 241 GINVRLCVVINPGNPTGACISENSMEKVLRFAKAKGIVLLAD 282


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 297 QDETYVSEEEDIHSQKQSQRQSYVLKLFDRSVD 395
           Q+E Y S++   +SQK+ + +     LFD S D
Sbjct: 527 QEEKYESKQRTYYSQKEQEEEIEQEVLFDASSD 559


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 195 ARGRLQGALMEILEP-ALDSDDSTELTPGKRRQSDQDETYVSEEED 329
           A  +++    E   P AL + DST     K   S  DET   EE D
Sbjct: 178 ASNKIKSEASESASPSALQALDSTAAGSSKEHSSPHDETVKKEEND 223


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +3

Query: 453 NQPKADYSKFGYDQPEDNEDIMTIDLPGPEGPPVSRIPELLPEQKAAN 596
           NQP   Y    YD+  D      +D P P G    R  + +    A+N
Sbjct: 341 NQPLPSYQNSMYDRLYDGLSYSNLDTPLPSGATTPRRRDSMEPTYASN 388


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 234 EPALDSDDSTELTPGKRRQSDQDETYVSEEEDIHSQKQSQ 353
           E A D D+S +L   +  + ++DE    E+++  S+K  +
Sbjct: 203 EEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSKK 242


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
 Frame = +3

Query: 117 FTPIKNKGKSITQFPQISNKVKEVTTARGRLQGALMEILEPALDSDDSTELTPGKR---- 284
           F P   K   ++ +P    K +    A   +QG   +I  PA +   S EL   ++    
Sbjct: 204 FCPPGGKLLKVSIYPSEFGKSR---MAAEHVQGPPRDIFTPADNQPSSAELHEAQKFGFD 260

Query: 285 -RQSDQDETYVSEEEDIHSQ----KQSQRQSYVLKLFDRSVDLSQFDEDSPLYPIC 437
             +SDQDE     EED+ ++    K  Q Q   L+ +   V+         +Y  C
Sbjct: 261 NNESDQDEEDALIEEDLGNEFDMVKLRQYQLERLRYYYAVVECDSVRTAKVIYETC 316


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
 Frame = +3

Query: 243 LDSDDSTELTPGKRRQSDQDETYVSEEEDIHSQKQSQRQSYVLKLFDRSVDLSQFDEDSP 422
           L S +  E+ PG+    ++ E  + E+E +   ++ +   Y++K   R+V+ +  DE+  
Sbjct: 13  LYSYEPQEINPGEEIPENEREISIVEDEIVCLLEKGEDDWYLVK---RNVNSNDDDEEIG 69

Query: 423 LYP---ICRAWIANQPKA--DYSKFGYDQPEDNEDIMTIDLPG 536
           + P   I  A  + + KA  DY++   D+     D  T+D  G
Sbjct: 70  IVPSNYITEAEPSTKMKALYDYTQQSVDEISFQAD-QTLDCYG 111


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 45  NYFSYFNFK*IQGAGL 92
           NYF Y+ F  +QGAG+
Sbjct: 286 NYFFYYGFSVMQGAGI 301


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 492 QPEDNEDIMTIDLPGPEGPPVSRI 563
           Q E NE+ M IDL  PE   + R+
Sbjct: 774 QHETNEEAMDIDLKVPESGAIGRV 797


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 288 QSDQDETYVSEEEDIHSQKQSQR 356
           +S +DE+ VS  ED HS K+ ++
Sbjct: 11  ESSEDESSVSSIEDQHSSKEPEQ 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,814
Number of Sequences: 5004
Number of extensions: 51202
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)