Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0983
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.56 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   0.98 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.0  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.2  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 321 EEDIHSQKQSQRQSYVLKLFDRSVDLSQFDEDSPLYP 431
           EE ++S K    + Y+ +L +    L +FD   P YP
Sbjct: 257 EEYLYSHKLLLNRYYLERLSNDLPHLEEFDWQKPFYP 293


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 321 EEDIHSQKQSQRQSYVLKLFDRSVDLSQFDEDSPLYP 431
           EE ++S K    + Y+ +L +    L +FD   P YP
Sbjct: 257 EEYLYSHKLLLNRYYLERLSNDLPYLEEFDWQKPFYP 293


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = +3

Query: 111 RIFTPIKNKGKSITQFPQISNKVKEVTTARGRLQGALM--EILEPALD---SDDSTELTP 275
           ++ TPIK++     +  QIS K     T +G     +   EI +   D    D  TEL+ 
Sbjct: 251 KMLTPIKSEPIDAYEMHQISKKKLSPATPKGSKCSMITTPEIKKEVEDMEYDDIKTELST 310

Query: 276 GKRRQSDQDETYVSEEED 329
           G        ET   EE D
Sbjct: 311 G-MNDDIPPETEEEEEND 327


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
          precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 30 SFVLINYFSYFNF 68
          SF+LINYF +  F
Sbjct: 15 SFILINYFIFLYF 27


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 246 PMPVPIFPLTLPAASLE 196
           P+PVPI+    P  S+E
Sbjct: 364 PVPVPIYCGNFPPRSME 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,246
Number of Sequences: 438
Number of extensions: 4285
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)