Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0982
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 35 0.010
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.1
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 2.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.5
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 25 6.0
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo... 25 7.9
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 34.7 bits (76), Expect = 0.010
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P +P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 1569 PAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYS 1628
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 1629 PTSPSYSPTS 1638
Score = 33.9 bits (74), Expect = 0.017
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S+ +P + P P S P PTS ++ T YS
Sbjct: 1583 PSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1642
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 1643 PTSPSYSPTS 1652
Score = 33.1 bits (72), Expect = 0.030
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1670
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 1671 PTSPSYSPTS 1680
Score = 33.1 bits (72), Expect = 0.030
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 1625 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 1685 PTSPSYSPTS 1694
Score = 33.1 bits (72), Expect = 0.030
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 1639 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 1699 PTSPSYSPTS 1708
Score = 33.1 bits (72), Expect = 0.030
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 1713 PTSPSYSPTS 1722
Score = 33.1 bits (72), Expect = 0.030
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1726
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 1727 PTSPSYSPTS 1736
Score = 33.1 bits (72), Expect = 0.030
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 1741 PTSPSYSPTS 1750
Score = 29.5 bits (63), Expect = 0.37
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 425 PNASSSATMHSSKTPKFPMPPQCSGMCPFIRPTSQAFFTTGHGYSP 288
P+ S S+ +S+ P P S P PTS ++ T YSP
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSP 1601
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 425 PNASSSATMHSSKTPKFPMPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PATGMISS 249
P ++ +S +P + P P PTS ++ T YSP SY P + S+
Sbjct: 1549 PGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSA 1608
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 466 GQTPIIIAGNKEQQKKYLGRLIDEPLV 546
G I ++ + E+ KKY+GR + PL+
Sbjct: 262 GDRAIAVSPHDERYKKYVGRFVKHPLI 288
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 321 SLLYNGPRVLPRLIILTRHRNDFILRE 241
S + NG RVLP I RH +I+RE
Sbjct: 12 STMRNGARVLPPEAISKRHIGPYIIRE 38
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 473 VCPKDVPPIAVVMPVHPNASSSATMHSSKTPKFPMPPQCS-GMCPFIRPTS 324
+ P P V+P+ P AS A+ + T P P S + P + P S
Sbjct: 1008 IVPPPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVS 1058
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Frame = +1
Query: 172 IPTTGFCFELTDEQKALQELARKF---------TKDEIIPVAGQYDKTGEYPWPVVK 315
IP F +++ ++++A+ L+++ + D +I + GQ + YPW VV+
Sbjct: 226 IPVYDFPYDIEEDEEAIINLSQQLRATIPFAIVSSDRLIEMNGQTVRGRAYPWGVVE 282
>SPBC4B4.06 |vps25||ESCRT II complex subunit
Vps25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 7.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 402 RSGRTCVWMYWHHDSYWGHVL 464
R+ + W+YW S WG+++
Sbjct: 90 RNPKDVFWVYWRSISEWGNMI 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,448
Number of Sequences: 5004
Number of extensions: 46470
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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