Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0982
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 33 0.13
SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38) 31 0.51
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 30 1.2
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044) 29 2.7
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_24263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0) 28 4.8
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 27 8.3
>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 75.8 bits (178), Expect = 2e-14
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = +1
Query: 364 GGIGNFGVFEECIVADELAFXXXXXXXXXXXXSLGQTPIIIAGNKEQQKKYLGRLIDEPL 543
GGIG GV + C+V +EL++ SL + P+I+AGN+EQ+KKYLGR+I EP+
Sbjct: 175 GGIG-LGVLDGCVVTEELSYACSGIQTAIEANSLAEMPVILAGNEEQKKKYLGRMIKEPI 233
Query: 544 VAAYGVTEP 570
+AAY VTEP
Sbjct: 234 MAAYCVTEP 242
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/38 (52%), Positives = 31/38 (81%)
Frame = +1
Query: 181 TGFCFELTDEQKALQELARKFTKDEIIPVAGQYDKTGE 294
+G F ++DE +ALQ++ARKF ++EI+P A ++DKTGE
Sbjct: 32 SGISFAMSDELRALQDMARKFAREEIMPKAAEHDKTGE 69
>SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 58.0 bits (134), Expect = 5e-09
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Frame = +1
Query: 199 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPW--PVVKKAWEVGLMNGHIPEHCGGI 372
LT EQ L+E+A F ++E+ P A Q DK +P KK ++G +P GGI
Sbjct: 41 LTSEQIHLREVAYNFCQNELAPYADQIDKENNFPKLREFWKKLGDLGFHGITVPVDDGGI 100
Query: 373 GNFGVFEECIVADELAFXXXXXXXXXXXXS-LGQTPIIIAGNKEQQKKYLGRLIDEPLVA 549
G+ G E IV +E++ S L I GNKEQ++KYL +L+ +
Sbjct: 101 GS-GYMEHIIVLEEMSRVSGSIALSYGAHSNLCINQIARNGNKEQKRKYLPKLLSGEHIG 159
Query: 550 AYGVTE 567
A ++E
Sbjct: 160 ALAMSE 165
>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +1
Query: 196 ELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGIG 375
+L + + L++ R F +E+ PVAG++DK YP VK E+GL+ +PE GG G
Sbjct: 40 KLPETHEMLRKTCRDFADNELTPVAGKFDKEHRYPQEKVKMLGELGLLGVEVPESLGGTG 99
Query: 376 NFGVFEECIVADELA 420
F I +E++
Sbjct: 100 -LDAFAYAIAMEEIS 113
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 517 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 576
Query: 290 PVL-SY*PAT 264
P SY P++
Sbjct: 577 PTSPSYSPSS 586
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 461 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 520
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 521 PTSPSYSPTS 530
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 475 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 534
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 535 PTSPSYSPTS 544
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 489 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 548
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 549 PTSPSYSPTS 558
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ T YS
Sbjct: 503 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 562
Query: 290 PVL-SY*PAT 264
P SY P +
Sbjct: 563 PTSPSYSPTS 572
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 434 PVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 264
P P+ S ++ +S +P + P P S P PTS ++ T YSP SY P +
Sbjct: 458 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 516
Score = 30.7 bits (66), Expect = 0.89
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF---PMPPQCSGMCPFIRPTSQAFFTTGHG 297
P +P + P P+ S ++ +S +P P P S P PTS ++ T
Sbjct: 417 PAFMPSSPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPS 476
Query: 296 YSPVL-SY*PAT 264
YSP SY P +
Sbjct: 477 YSPTSPSYSPTS 488
Score = 30.7 bits (66), Expect = 0.89
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P P P P+ S ++ +S +P + P P S P PTS ++ + YS
Sbjct: 531 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYS 590
Query: 290 P 288
P
Sbjct: 591 P 591
Score = 30.3 bits (65), Expect = 1.2
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Frame = -1
Query: 575 APGSVTP*AATNGSSISLPRYFFCC-SLFPAIMMGVCPKDVPPIAVVMPVHPNA--SSSA 405
+P +P AA+ G S S P + S+ PA P P P P++ S ++
Sbjct: 399 SPYIPSPAAASPGYSPSSPAFMPSSPSMSPA-----SPSYSPTSPGYSPSSPSSGYSPAS 453
Query: 404 TMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYSPVL-SY*PAT 264
+S +P + P P S P PTS ++ T YSP SY P +
Sbjct: 454 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 502
>SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)
Length = 501
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -1
Query: 470 CPKDVPPIAVVMPV--HPNASSSATMHSSKTPKFPMPPQCSGMCPFIRPT 327
CP+ +P + PV P S +A PK +P QC C RPT
Sbjct: 273 CPRKLPRNLSICPVLCQPRESRTAQTEPKTRPKLALPAQCPATC---RPT 319
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 467 PKDVPPIAVVMPVHPNASSSATMHSSKTPKF-PMPPQCSGMCPFIRPTSQAFFTTGHGYS 291
P + P P P+ + ++ ++ +P + P P + P PTS ++ T YS
Sbjct: 729 PSNSPASPSYSPASPSYTPASPSYTPASPSYTPASPSYTPTIPSYSPTSPSYSPTSPSYS 788
Query: 290 P 288
P
Sbjct: 789 P 789
>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 199 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVG 333
LT+ L + K E A Y+ TG W VV +AW VG
Sbjct: 591 LTESALNLASICSKVHHGEANLAADYYEMTGLPLWEVVNRAWNVG 635
>SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044)
Length = 156
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 490 GNKEQQKKYLGRLIDEPLVAAYGVTEPG 573
G+ EQ+KK+L L++ + +A+ +TEPG
Sbjct: 98 GSPEQKKKWLDPLLNGDIRSAFCMTEPG 125
>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 490 GNKEQQKKYLGRLIDEPLVAAYGVTEPG 573
G+ EQ+KK+L L++ + +A+ +TEPG
Sbjct: 138 GSPEQKKKWLDPLLNGEMRSAFCMTEPG 165
>SB_24263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 388 RRQNSLCPRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 266
RR SLC + + + R PKPS + G P ++ PP
Sbjct: 23 RRVTSLCAKTLNDQSRGRSAEPKPSRPVSPGVPSTHPDSPP 63
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 440 VMPVHPNASSSATMHSSKTPKFPMPPQCSGMCPFIRPTSQAF 315
V VH S+ + S+T + PPQC + P I P+ + +
Sbjct: 242 VFIVHKPTSTKFRVQVSETEQDANPPQCGEVSPIISPSMRIY 283
>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
Length = 883
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 288 GGVPVARCKEGLGSWPNERTHSRTLRGHR 374
G VP+A +EG G+ P ++ H+ T++ R
Sbjct: 413 GRVPMATKQEGSGNSPRDKFHNHTIKDKR 441
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 321 LGSWPNERTHSRTLRGHREFWRLRRVHRSGRTCVWMYWHHDSYWGHVLRTNSHHYCW 491
LG + +R H R ++R ++H G C ++ SYWG + + CW
Sbjct: 61 LGEYFFDR-HPRIFAEVLNYYRTGKLHCPGDVCSTLFQEELSYWG-INDRDMEQCCW 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,577,201
Number of Sequences: 59808
Number of extensions: 365816
Number of successful extensions: 1089
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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