Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0981
         (603 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;...    52   1e-05
UniRef50_Q89UH4 Cluster: Blr1443 protein; n=3; Bradyrhizobium|Re...    36   0.97 
UniRef50_Q5GU94 Cluster: Hemagglutinin; n=1; Xanthomonas oryzae ...    33   5.2  
UniRef50_P0C211 Cluster: Gag-Pro-Pol polyprotein (Pr160Gag-Pro-P...    32   9.1  

>UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 133

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +1

Query: 292 MAFMMPVVKNDWDIYNSQXXXXXXXXXXKAGFNVGGRVRKISE-SRSEGPALSPRSAGLS 468
           MAFMMPV+KN+WDIY +                   R RK+SE S+SEGP+LS  S G S
Sbjct: 1   MAFMMPVMKNEWDIYKTNRSRRSSECSNPQAC----RSRKVSECSKSEGPSLS-TSPG-S 54

Query: 469 PHRSAPAMRSLSYCRAPHSRVSLRAA 546
              ++PA RS+       SR S RA+
Sbjct: 55  DFLTSPAHRSVPLTSRHFSRTSSRAS 80


>UniRef50_Q89UH4 Cluster: Blr1443 protein; n=3; Bradyrhizobium|Rep:
           Blr1443 protein - Bradyrhizobium japonicum
          Length = 275

 Score = 35.5 bits (78), Expect = 0.97
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 351 GPLRVVYVPIVLHYWHHERHLGEGGGDSFVGTF 253
           GP + V    V H WHH   L EGG  +F GTF
Sbjct: 202 GPFKYVLATPVFHRWHH-TSLEEGGDTNFAGTF 233


>UniRef50_Q5GU94 Cluster: Hemagglutinin; n=1; Xanthomonas oryzae pv.
           oryzae|Rep: Hemagglutinin - Xanthomonas oryzae pv.
           oryzae
          Length = 998

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 371 RRRRGSTWEAGCGKYRSHGPKARRCH 448
           R R G    AG G+YR H P+ R CH
Sbjct: 750 RGRCGGCGTAGLGRYRHHHPRGRHCH 775


>UniRef50_P0C211 Cluster: Gag-Pro-Pol polyprotein (Pr160Gag-Pro-Pol)
            [Contains: Matrix protein p19 (MA); Capsid protein p24
            (CA); Nucleocapsid protein p15-pro (NC- pro) (NC');
            Protease (EC 3.4.23.-) (PR); p1; Reverse
            transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7)
            (EC 3.1.26.4) (RT); Integrase (IN)]; n=233; root|Rep:
            Gag-Pro-Pol polyprotein (Pr160Gag-Pro-Pol) [Contains:
            Matrix protein p19 (MA); Capsid protein p24 (CA);
            Nucleocapsid protein p15-pro (NC- pro) (NC'); Protease
            (EC 3.4.23.-) (PR); p1; Reverse
            transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7)
            (EC 3.1.26.4) (RT); Integrase (IN)] - Human T-cell
            leukemia virus 1 (isolate Melanesia mel5 subtype
            C)(HTLV-1)
          Length = 1462

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 330  VPIVLHYWHHERHLGEGGGDSFVGTFLEKLPPLRRNKICSRKLTLRSIMI 181
            VPI+LH+ H  ++LG   G+ +  TFL+   PL   K  +   TL  I+I
Sbjct: 983  VPILLHHSHRFKNLGAQTGELW-NTFLKTAAPLAPVKALTPVFTLSPIII 1031


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,817,146
Number of Sequences: 1657284
Number of extensions: 9177542
Number of successful extensions: 27305
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27292
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)