Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0980
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    28   4.8  

>09_02_0077 +
           3964729-3964734,3965194-3965289,3965744-3973579,
           3973665-3973982,3974565-3974763,3974937-3975202,
           3975288-3975574,3976714-3977818,3977900-3978046,
           3978146-3978226,3978315-3978540,3978622-3978761,
           3979539-3979645,3979739-3979841
          Length = 3638

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 428 TAAKIVKLSLRSVDFWGEGGGLSVYPCTIPTPRNPMVMKISTVIFF 565
           +A+   KL   S  + G+ GGL +  C++P+  +P+  +I + + F
Sbjct: 71  SASLTSKLFAFSQGWGGKEGGLGLIACSLPSGCDPIATEIGSTLHF 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,809
Number of Sequences: 37544
Number of extensions: 315224
Number of successful extensions: 816
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)