Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0980
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                29   2.1  
SB_22697| Best HMM Match : Hirudin (HMM E-Value=3.2)                   29   2.1  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.6  
SB_5479| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  

>SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 584

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +1

Query: 511 HSHPAEPHGYEDI-HGY 558
           H +PA PHGY ++ HGY
Sbjct: 418 HGYPAAPHGYHEVPHGY 434



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +1

Query: 511 HSHPAEPHGYEDI-HGY 558
           H +PA PHGY ++ HGY
Sbjct: 446 HGYPAAPHGYHEVPHGY 462


>SB_22697| Best HMM Match : Hirudin (HMM E-Value=3.2)
          Length = 306

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +1

Query: 511 HSHPAEPHGYEDI-HGY 558
           H +PA PHGY ++ HGY
Sbjct: 210 HGYPAAPHGYHEVPHGY 226


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -1

Query: 569  NKKK*PWIS--S*PWGSAGWEWCRGKRLDPLPPPKNRRT 459
            N K+ PW S  +       W +CRG    P PPP+ R T
Sbjct: 2841 NSKRGPWCSLTNNYDKDRKWGYCRGYPPKPKPPPRPRPT 2879


>SB_5479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 475 GGGRGSKRLPLHHSHPAEPH 534
           G   GS RLP HH HP   H
Sbjct: 50  GDDGGSDRLPFHHIHPYTHH 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,735,548
Number of Sequences: 59808
Number of extensions: 316011
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)