Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0980
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    36   0.028
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    36   0.028
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    36   0.028
U00025-2|ABA54414.1|  418|Caenorhabditis elegans Amp-activated k...    27   7.5  
U00025-1|ABA54413.1|  589|Caenorhabditis elegans Amp-activated k...    27   7.5  
AY347272-1|AAR06927.1|  589|Caenorhabditis elegans AMP-activated...    27   7.5  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity...    27   10.0 

>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
           protein F13B9.1c protein.
          Length = 1609

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 454 PKVRRFLGGGRGSKR--LPLHHSHPAEPHGYEDIHG 555
           P +RR   GGR   R  +PLHHSH    H Y D +G
Sbjct: 544 PAIRRESAGGRNDGRTSVPLHHSHSFTEHMYHDQNG 579


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
           protein F13B9.1b protein.
          Length = 1614

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 454 PKVRRFLGGGRGSKR--LPLHHSHPAEPHGYEDIHG 555
           P +RR   GGR   R  +PLHHSH    H Y D +G
Sbjct: 544 PAIRRESAGGRNDGRTSVPLHHSHSFTEHMYHDQNG 579


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
           protein F13B9.1a protein.
          Length = 1632

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 454 PKVRRFLGGGRGSKR--LPLHHSHPAEPHGYEDIHG 555
           P +RR   GGR   R  +PLHHSH    H Y D +G
Sbjct: 544 PAIRRESAGGRNDGRTSVPLHHSHSFTEHMYHDQNG 579


>U00025-2|ABA54414.1|  418|Caenorhabditis elegans Amp-activated
           kinase protein 1,isoform b protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +2

Query: 437 KIVKLSLRSVDFWGEGGGLSVYPCTI---PTPRNPMVMKISTVIF 562
           K V LSL+SVD   E   LS+Y   +   PTP NP  +K+S  +F
Sbjct: 237 KHVFLSLKSVDM--EWKVLSMYHIIVRSKPTPINPDPVKVSLQLF 279


>U00025-1|ABA54413.1|  589|Caenorhabditis elegans Amp-activated
           kinase protein 1,isoform a protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +2

Query: 437 KIVKLSLRSVDFWGEGGGLSVYPCTI---PTPRNPMVMKISTVIF 562
           K V LSL+SVD   E   LS+Y   +   PTP NP  +K+S  +F
Sbjct: 408 KHVFLSLKSVDM--EWKVLSMYHIIVRSKPTPINPDPVKVSLQLF 450


>AY347272-1|AAR06927.1|  589|Caenorhabditis elegans AMP-activated
           protein kinase alphasubunit 2 protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +2

Query: 437 KIVKLSLRSVDFWGEGGGLSVYPCTI---PTPRNPMVMKISTVIF 562
           K V LSL+SVD   E   LS+Y   +   PTP NP  +K+S  +F
Sbjct: 408 KHVFLSLKSVDM--EWKVLSMYHIIVRSKPTPINPDPVKVSLQLF 450


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 332 TDYLSLVIIDQYYFCTYS*YDN*LLRYLRINATAAKIVKLSLRSV 466
           TD + L I DQ  +  YS YDN +    R   +   IVKLS  +V
Sbjct: 722 TDDILLTIEDQLDYDYYSPYDNIIANVQRAFPSRNMIVKLSETNV 766


>Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical
           protein C48D1.3 protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 512 WCRGKRLDPLPPPKNRRTLGKV*QFL-PRW 426
           W  G +++ +PP K    +  V Q+L PRW
Sbjct: 304 WNNGTKVESIPPDKRNMVVPLVFQYLTPRW 333


>AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity
           choline transporterCHO-1 protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 512 WCRGKRLDPLPPPKNRRTLGKV*QFL-PRW 426
           W  G +++ +PP K    +  V Q+L PRW
Sbjct: 304 WNNGTKVESIPPDKRNMVVPLVFQYLTPRW 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,646,852
Number of Sequences: 27780
Number of extensions: 250874
Number of successful extensions: 576
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)