Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0980
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi...    29   3.1  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   7.1  
At1g79360.1 68414.m09248 transporter-related low similarity to S...    27   7.1  

>At5g16630.1 68418.m01947 DNA repair protein Rad4 family low
           similarity to SP|Q01831 DNA-repair protein complementing
           XP-C cells (Xeroderma pigmentosum group C complementing
           protein) {Homo sapiens}; contains Pfam profile PF03835:
           DNA repair protein Rad4
          Length = 865

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 443 QFLPRWR*YVSTLITNYRTKNRYKNN 366
           Q   RW   +S+++T  R KNRY NN
Sbjct: 758 QAASRWYQLLSSILTRERLKNRYANN 783


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 254  YLTHF--LRF*NNCSKSNKVIQNDGFFNTDYLSLVIIDQYY 370
            YL H   +RF  NC +   + ++DG F    L L +I+ +Y
Sbjct: 2702 YLEHLEKIRFRYNCERVVGLDKHDGIFLIGELCLYVIENFY 2742


>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 163 LVFSFMNFNLISFNAFLRLASTKINLISIYLSDALSK 273
           L  S ++FN+    AF  L     NLI+++L D LS+
Sbjct: 346 LALSNLDFNIYLSAAFNALMDLPANLITLFLVDKLSR 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,997,715
Number of Sequences: 28952
Number of extensions: 234578
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)