Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0979
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    31   0.13 
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   4.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   6.4  

>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = -1

Query: 282 NVLPYFSLWVITLQLIILLSYHIHMYILYVCLPIVSMIMSLALIYKSTYINVHIFQRFHK 103
           ++LPY    VI +  +++LS  +  YILY+C    S I+S  ++    Y+N      FH 
Sbjct: 12  HLLPYIEHSVIPIIALLVLS--LIFYILYICFGTTSYILSGIIL--GAYVN----SLFHN 63

Query: 102 AHNL 91
            H++
Sbjct: 64  NHSV 67


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -2

Query: 233 YFYHTTYICIYYMYVYL 183
           +F ++ + C+YY+++YL
Sbjct: 82  FFLYSLHRCVYYLFIYL 98


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 277 PALFFSVGYYTSANNTFIIPHTYVYIICMSTY 182
           P  FFS  YYT   +TF +   Y + +  S +
Sbjct: 122 PLWFFSFLYYTDIGSTFFVLLAYDFALRKSAF 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,954
Number of Sequences: 5004
Number of extensions: 46456
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)