Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0979
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             28   5.0  
SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45)                    27   8.8  

>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 291 LHTNVLPYFSLWVITLQLIILLSYHIHMY-ILYVCLPIVSMIMSLALIYKSTYINVHIFQ 115
           L T ++  + +   T+    L++YHIH+Y I Y  +    +   L  +Y  +Y  +H   
Sbjct: 310 LLTYLINLYPISYRTIHFSPLVTYHIHLYPISYRTIHFSPLFTYLIHLYPISYRTIHFSP 369

Query: 114 RFHKAHNL 91
            F    NL
Sbjct: 370 LFTYLINL 377


>SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 222 YHIHMYILYVCLPIVSMIMSLALIYKSTYINVHIFQ--RFHKAHN 94
           +HI    + + + I+  I+++ +I     IN++++Q  R+H  HN
Sbjct: 86  HHITFNNIIIIIIIIVNIITITIIITIIMINIYLYQLHRYHHPHN 130


>SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45)
          Length = 853

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 297 YLLHTNVLPYFSLWVITLQLIILLSYHIHMYILYVCLPIVSMI 169
           Y + T  +  + +   T+Q   + +Y I  YIL+ C PI + I
Sbjct: 796 YTIQTYTIQTYPIQTYTIQTYTIQTYPIQTYILHTC-PIQTFI 837


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,907,557
Number of Sequences: 59808
Number of extensions: 330114
Number of successful extensions: 1162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)