Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0979
         (600 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002760-1|AAH02760.1|  182|Homo sapiens plasma membrane proteol...    31   3.1  
AF137386-1|AAD33060.1|  182|Homo sapiens plasmolipin protein.          31   3.1  
BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    31   4.1  
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    31   4.1  
AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    30   5.4  

>BC002760-1|AAH02760.1|  182|Homo sapiens plasma membrane
           proteolipid (plasmolipin) protein.
          Length = 182

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -1

Query: 261 LWVITLQLIILLSYHIHMYILYVCLPIVSMI--MSLALIYKSTYI 133
           LW++T+ L  L  + +HM +  V  P+V MI  +S  ++Y + +I
Sbjct: 76  LWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYITAFI 120


>AF137386-1|AAD33060.1|  182|Homo sapiens plasmolipin protein.
          Length = 182

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -1

Query: 261 LWVITLQLIILLSYHIHMYILYVCLPIVSMI--MSLALIYKSTYI 133
           LW++T+ L  L  + +HM +  V  P+V MI  +S  ++Y + +I
Sbjct: 76  LWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYITAFI 120


>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -2

Query: 599 NAPTIMIGEKGADLIK 552
           NAPTIMI EK AD+IK
Sbjct: 557 NAPTIMIAEKAADIIK 572


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -2

Query: 599 NAPTIMIGEKGADLIK 552
           NAPTIMI EK AD+IK
Sbjct: 445 NAPTIMIAEKAADIIK 460


>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 233 YFYHTTYICIYYMYVYLLFL 174
           Y Y  TYICI+  YVY+ ++
Sbjct: 151 YMYVRTYICIFMFYVYVFYM 170


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,191,988
Number of Sequences: 237096
Number of extensions: 1508274
Number of successful extensions: 5497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5491
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)