Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0979
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.43 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 584 MIGEKGADLIKEFW 543
           M+GE+ AD IKE W
Sbjct: 595 MVGERAADFIKEDW 608


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 252 ITLQLIILLSYHIHMYILYVCLPIVSMIMSLALIY 148
           +TL + ILLS  + + ++   LP  S+++ L   Y
Sbjct: 265 VTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKY 299


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 232 TFIIPHTYVYIICMSTY 182
           TF++PH ++  IC + +
Sbjct: 91  TFVVPHQFIKRICSALF 107


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 303 GLYLLHTNVLPYFSLWV 253
           G YLL T +L   S+W+
Sbjct: 313 GKYLLFTMILVTLSIWI 329


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 222 YHIHMYILYVCLPIVSMIMSLALIY 148
           +HI + I+Y  L I+S++ +  +I+
Sbjct: 56  FHIGLAIIYSMLLIMSLVGNCCVIW 80


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 222 YHIHMYILYVCLPIVSMIMSLALIY 148
           +HI + I+Y  L I+S++ +  +I+
Sbjct: 56  FHIGLAIIYSMLLIMSLVGNCCVIW 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,146
Number of Sequences: 438
Number of extensions: 3053
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)