Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0979
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54620.1 68418.m06801 ankyrin repeat family protein contains ...    29   2.4  
At1g34130.1 68414.m04234 oligosaccharyl transferase STT3 subunit...    28   5.4  
At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containi...    27   7.2  

>At5g54620.1 68418.m06801 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 431

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/50 (22%), Positives = 30/50 (60%)
 Frame = -1

Query: 267 FSLWVITLQLIILLSYHIHMYILYVCLPIVSMIMSLALIYKSTYINVHIF 118
           ++ W I + + ++ SY + M++ Y+  PI+ M + L + +   ++ +++F
Sbjct: 353 YNWWYIFISVPLVCSYALSMFLKYIQFPILCMPLYLMMAFILGFL-IYVF 401


>At1g34130.1 68414.m04234 oligosaccharyl transferase STT3 subunit,
           putative similar to SP|P39007 Oligosaccharyl transferase
           STT3 subunit {Saccharomyces cerevisiae}; contains Pfam
           profile PF02516: Oligosaccharyl transferase STT3 subunit
          Length = 735

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -1

Query: 303 GLYLLHTNVLPYFSLWVITLQLIILLSYHIHMYILYVCLPIVSMIMSLAL 154
           G Y+   N++P +      L L+I   Y + +YI Y C+ I+ M++++ +
Sbjct: 233 GGYVFIINLVPLY-----VLVLLITGRYSMRLYIAYNCMYILGMLLAMQI 277


>At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 710

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -3

Query: 295 FAAYKRPALFFSVGYYTSANNTFIIPHTYVYIICMSTYCFYDHEFGFNL*IYVYK-CS 125
           F+   RP  F +   + S +N+  I     +  C   Y    HEF  N  +Y+Y  CS
Sbjct: 128 FSGESRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCS 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,647,360
Number of Sequences: 28952
Number of extensions: 220331
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)