Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0978
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.98 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 186 LATVQLGASCRVHG 145
           L  V LG++CR+HG
Sbjct: 433 LEAVNLGSACRIHG 446


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 174 QLGASCRVHGESLVRVDGHTE 112
           + G SC +HG  L  +  HTE
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTE 449


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 174 QLGASCRVHGESLVRVDGHTE 112
           + G SC +HG  L  +  HTE
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTE 449


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 374 WLGSFFWEAPTVAKYAITFFVFSVLPAPDSPV 279
           +L  F W+ P    Y  T    + LP P  P+
Sbjct: 281 YLEEFDWQKPFYPGYYPTMTYSNGLPFPQRPI 312


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 549 KQIGFDVSTSQFSGWTEMDTDEFTETRGVVVT 454
           K   FD++TSQ     E+  D  T  +G +V+
Sbjct: 158 KLFAFDLNTSQLLKQVEIPHDVATTGKGELVS 189


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -2

Query: 479  PKREELSLRTVLALPNASSTGLVCTT*SSREPFFSWL 369
            P  EE    T   +P        CTT +S+    SW+
Sbjct: 1067 PMSEERRQHTAEGVPEQPPHDTTCTTLTSQTIRISWM 1103


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 371 LGSFFWEAPTVAKYAITFFVFSVLPAPDSPV 279
           L  F W+ P    Y  T    + LP P  P+
Sbjct: 282 LEEFDWQKPFYPGYYPTMTYSNGLPFPQRPI 312


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 167 PSCTVA-SVVRKCHLTSSPFPTALTSTC*P 253
           P  ++A S VRK H T  P P   T    P
Sbjct: 233 PDTSMAKSFVRKVHATKPPKPQTKTKPTSP 262


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 380 FSWLGSFFWEA 348
           FSW+GS  W A
Sbjct: 370 FSWIGSDGWSA 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,831
Number of Sequences: 438
Number of extensions: 3342
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)