Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0977
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.8  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   3.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 446 DRVQCK*SRRKRGSRLDRVVLQCTREALFYAP 351
           DRV  +   + R  ++DR  L C R  + + P
Sbjct: 313 DRVLSELVSKMREMKMDRTELGCLRSIILFNP 344


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 446 DRVQCK*SRRKRGSRLDRVVLQCTREALFYAP 351
           DRV  +   + R  ++DR  L C R  + + P
Sbjct: 313 DRVLSELVSKMREMKMDRTELGCLRSIILFNP 344


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 127 LVSLSPPSVTISKRAGEQEARGQSSDTGVARH 32
           L+ L P   ++   +GE  +RG S  +    H
Sbjct: 375 LLGLMPSGSSVHSDSGENNSRGHSGQSSSHHH 406


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 448 KTAFNASRVAASEEAVLTEWFFSVQERLYFTL 353
           +TAF   ++ A E    T  + SV ERL   L
Sbjct: 12  RTAFTYEQLVALENKFKTTRYLSVCERLNLAL 43


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 352 LVLELTIFHSIFPIAGLFLNI 290
           +V+ LTI + I  + G+F NI
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNI 59


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 293 IEKQTCDWKDAVKNCKLKNKERKIKPLL 376
           +EK   ++K  +K  +L  K+RKI  ++
Sbjct: 432 LEKHLIEYKKMLKIKRLFGKDRKIMDMV 459


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,251
Number of Sequences: 438
Number of extensions: 3123
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)