Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0976
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080...    89   2e-18
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891...    80   8e-16
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670...    76   2e-14
09_02_0115 + 4413714-4414475                                           32   0.29 
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    29   2.1  
12_02_0312 + 17395716-17398112                                         29   2.7  
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100...    28   3.6  
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343...    28   3.6  
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115...    27   6.3  

>01_06_0134 +
           26805329-26805430,26807130-26807230,26807876-26808032,
           26808386-26808582,26809188-26809287,26809501-26809536
          Length = 230

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 53/153 (34%), Positives = 80/153 (52%)
 Frame = +3

Query: 39  LSDAYVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 218
           ++DA V KQI+ M+ FI Q                FNIEK +LV+ ++ KI         
Sbjct: 1   MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 219 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 398
                  I+ S  LN +R+KVL+ ++D V ++ ++A K+L  V  +   Y  LL  L+VQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120

Query: 399 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDY 497
            L +L EP V +R R+ D   VES+L  A+ +Y
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEY 153


>05_05_0231 +
           23488588-23488689,23488775-23488875,23489012-23489168,
           23489365-23489594,23489696-23489795,23489878-23489916
          Length = 242

 Score = 80.2 bits (189), Expect = 8e-16
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
 Frame = +3

Query: 39  LSDAYVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 218
           ++DA V KQI+ M+ FI Q                FNIEK +LV+ ++ +I         
Sbjct: 1   MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60

Query: 219 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 395
                  I+ S  LN AR+KVL+ ++  V  + ++A K L  V KD   Y ++L  LIV 
Sbjct: 61  QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120

Query: 396 ----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQQDY 497
                     Q+L +L EP+V +R R+ D+  VES+L  A+++Y
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEY 164


>01_01_0858 -
           6699126-6699128,6699219-6699318,6700052-6700278,
           6701032-6701188,6701422-6701522,6702147-6702251
          Length = 230

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 10/163 (6%)
 Frame = +3

Query: 39  LSDAYVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 218
           ++D  V +Q+K M  FI Q                F IEK +LV+ ++ +I         
Sbjct: 2   MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61

Query: 219 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 398
                  I+ S  LN +RL+VL+ ++D   ++L+ A K L  + +D  +Y  LL   IVQ
Sbjct: 62  QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121

Query: 399 ----------ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDY 497
                     +L +L EP V +R R+ D+ LVES+L  A+ +Y
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEY 164


>09_02_0115 + 4413714-4414475
          Length = 253

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 368 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 466
           LR   H+  + SLP    H HHPRP   +GS G
Sbjct: 20  LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52


>10_08_0762 -
           20410681-20411834,20411999-20412098,20412200-20412298,
           20412563-20414133,20415080-20415128
          Length = 990

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 267 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 401
           +RL++LK R+D++ N LD+A K+  E   D   + E  V   +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869


>12_02_0312 + 17395716-17398112
          Length = 798

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 240 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 383
           ++ +N+ N   L VLK+  D + + L      L+  PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430


>03_06_0108 +
           31708713-31709079,31709258-31709822,31709933-31710015,
           31710231-31710319,31710486-31710559,31710654-31710704,
           31710807-31710883,31711454-31712031,31712388-31712555,
           31713364-31713417,31713456-31713467,31713554-31713715
          Length = 759

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 386 TYCAGSLPAHGTHCHHPRPSNRQGSGG 466
           TYCAG +   G H HH    ++Q  GG
Sbjct: 34  TYCAGGVDDVGHHHHHHVHQHQQQHGG 60


>03_05_0331 -
           23233883-23233972,23234099-23234164,23234300-23234365,
           23234451-23234675,23234794-23235279
          Length = 310

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 488 LSFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCD 381
           +S  EQG  Q +  + + +GD GF +L +S  N  D
Sbjct: 106 ISIQEQGAAQFMDAILNRNGDPGFDDLADSSVNLLD 141


>01_06_1097 +
           34507376-34507395,34509380-34511214,34511263-34511598,
           34511800-34513691
          Length = 1360

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 494 VLLSFSEQGLHQSLVGLTDADGD-SGFHELEESLHNKCD 381
           V+ +F+ Q  H++++  TD+D   +GFH +EE     CD
Sbjct: 842 VVENFNVQEKHEAVI-FTDSDAALTGFHVIEEHFEVGCD 879


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,302
Number of Sequences: 37544
Number of extensions: 238509
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)