Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0974
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    31   0.17 
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    28   0.93 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.6  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   2.8  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.5  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 407 PVPPVVKAPRSPMIPPSAPRSLGSASCD 490
           P PP V   ++P IPP APR+L +AS D
Sbjct: 379 PKPPSVPTIQAP-IPPEAPRNLTNASVD 405


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 140 SEPGASSSGVPRAPPNCARCRNHRLKIELKGHKRYCKYQHCTCEKCRLTADRQRV 304
           S P A      R+P +C  CR  ++K + +     CK ++  C     T D+  V
Sbjct: 3   SSPPALKKFRKRSPKSCLICRRRKVKCDRQQPCSRCKERNEVCTYADDTIDKMNV 57


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 407 PVPPVVKAPRSPMIPPSAPRSL 472
           P PP +     P +PPSAP SL
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSL 439



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 383 PPGLELDRPVPPVVKAPRSPMIPPSAP 463
           PP L    P    + AP +P +PPSAP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAP 454


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 102 EPIDTIAGSSSAVYAAKLARVVTHAQ 25
           EP+  IA     +YAAK+A   +HA+
Sbjct: 145 EPVSIIADHIEIIYAAKIAAHASHAK 170


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 5   NSARGLCCACVTTRANFAAYTADEDPAMVS 94
           +  R  CC C+    N     ++ DPA V+
Sbjct: 720 DGVRSACCKCIPQLLNARILASNRDPAKVN 749


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 410  VPPVVKAPRSPMIPPSAP 463
            VPP   AP  P  PPSAP
Sbjct: 1714 VPPPPSAPPMPAGPPSAP 1731



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 383  PPGLELDRPVPPVVKAPRSPMIPP 454
            PP +    P PP +  P  P  PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,452
Number of Sequences: 5004
Number of extensions: 41620
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)