Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0972
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.25 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   4.1  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   5.4  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    25   7.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   7.2  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    25   9.5  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
 Frame = -3

Query: 408  LPLPRAESKTHYRTLNFRTILANFSS--RVAVSRMGKKGGRESR------SVGPGIHHLE 253
            L L    S++HY   +  TI+ N S+  R     +  +GGR++R         PGI+H+E
Sbjct: 2086 LLLQAESSESHYLPSSLATIITNDSAQERDEYMTITLQGGRKTRLGLSYTEKYPGIYHIE 2145

Query: 252  CFDP 241
             F P
Sbjct: 2146 IFSP 2149


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 305 RKEVVKVDR*VLVFIIWSVLIPESLNAAIKLRFELG 198
           ++ V+   R +L F  W+VL+P        L F++G
Sbjct: 86  KQRVIFFTRVLLTFFCWTVLLPLIFKHVWNLNFKIG 121


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
 Frame = -3

Query: 423 VADAQLPLPRAESKTHYRTLNFRTILAN---FSSRVAVSRMGKKGGRESRSVGPGIHHLE 253
           + +A +P    +S TH+       +L N              K+   E RS+ P    ++
Sbjct: 295 IREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVK 354

Query: 252 CFDPREPQCCDQTSLRTWRKAPH 184
            F+P +P C        W+KA H
Sbjct: 355 VFEPSDPICF------PWKKASH 371


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 86  WFVVADVISDGVFTSAISLIKSY 18
           WF++  VIS G   SA SL+K Y
Sbjct: 72  WFIMG-VISTGFAWSAYSLVKKY 93


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 155  IISKYPISIEVKSIIPIRYSIIKWFVVAD 69
            II +   ++E+ +IIP+RY   K  +V D
Sbjct: 1376 IIDEAAQAVELDTIIPLRYGAKKCILVGD 1404


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 177 ARVCVAPDHQQVPNQYRGQVHHPNQVQHYQ 88
           AR+   PD+Q+  N Y  Q+    Q+   Q
Sbjct: 259 ARLLTGPDYQKFVNSYHEQITLKKQISDLQ 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,765
Number of Sequences: 5004
Number of extensions: 35546
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)