Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0972
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107 31 0.78
04_04_0026 - 22222743-22222836,22223510-22223652,22224654-222246... 29 3.1
11_04_0207 - 14869288-14869291,14869484-14869776 28 4.1
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 4.1
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 28 4.1
10_02_0183 + 6365523-6366245 28 5.5
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543... 28 5.5
02_05_0946 + 32995427-32996149 28 5.5
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940... 27 7.2
10_07_0024 - 11964126-11964542,11965235-11966176,11966245-119662... 27 7.2
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 27 9.6
03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421 27 9.6
>07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107
Length = 346
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 34 DMALVKTPSLMTSATTNHLIMLYLIGMMDLTSILIGYLLMIWS 162
D+ ++ +P + NHL+M G M L ++ G+ L +WS
Sbjct: 206 DLTVIASPEIDDDDFENHLLMTTEDGGMGLARLVSGHSLQLWS 248
>04_04_0026 -
22222743-22222836,22223510-22223652,22224654-22224699,
22224916-22225043,22225178-22225285
Length = 172
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 161 LQIISKYPISIEVKSIIPIRYSIIKWFVVADVISDGVFTSAIS-LIKSYGT 12
+ I S P SI + S+ KWF V+ +G+F + LI Y T
Sbjct: 117 ITIASADPQSISANKPVHFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNT 167
>11_04_0207 - 14869288-14869291,14869484-14869776
Length = 98
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 55 PSLMTSATTNHLIMLYLIGMMDLTSILIGYLLMIWSHAHSRLPMRSFTPSSKR 213
PS+ T+ T L++L L G L S+ + + + S AHSR+ S + + +R
Sbjct: 4 PSITTTTTKLFLLLLLLHGGHCLKSLDMAMEMEMDSEAHSRMLWESSSSNGRR 56
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 333 SRVAVSRMGKKGGRESRSVGPGIHHLECFDPREPQCCDQTSLRTWRKAPH 184
+RVAV+ + +K V H+E FD R P+ Q + T KA H
Sbjct: 296 TRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSPEQPMQITRNTRPKADH 345
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 186 HRQARVCVAPDHQQVPNQYRGQVHHPNQVQHYQ 88
H Q + AP HQQ + Q HH N Q +Q
Sbjct: 34 HHQQQQTSAPHHQQYVQRQPQQHHHHNHHQQHQ 66
>10_02_0183 + 6365523-6366245
Length = 240
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 165 RTLSPADEELYAKFEAKFDRSIEALWDQNTPDDE 266
R L+P DEELY A+ DR + D++ + E
Sbjct: 62 RWLNPVDEELYNAHSARRDRFTRRIMDEHARELE 95
>05_01_0608 +
5429901-5429982,5430610-5431058,5436758-5437183,
5437270-5437643,5437655-5438113,5438191-5438361,
5438442-5438760
Length = 759
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 55 PSLMTSATTNHLIMLYLIGMMDLTSILIGYLLMIWSHAHSRLP 183
P+ + +L LY + +D T++L Y L+ W H H + P
Sbjct: 567 PTAFIAVDFKYLRDLYRVRAID-TNLLKCYSLLTWKHVHRKAP 608
>02_05_0946 + 32995427-32996149
Length = 240
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 375 SGSLTLPVEAVTERLRPLHIADPAPAELDSFA 470
S LT ++ L P HIADPAP L S+A
Sbjct: 64 SRRLTRGYASLVRGLLPRHIADPAPRLLYSYA 95
>10_07_0113 -
12993300-12993413,12993493-12993775,12993856-12994026,
12994104-12994948,12995035-12995307,12995549-12995953
Length = 696
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 55 PSLMTSATTNHLIMLYLIGMMDLTSILIGYLLMIWSHAHSRLP 183
P+ + L LY + +D T++L Y L+ W H H + P
Sbjct: 478 PTAFIAVDFKDLWDLYRVRAID-TNLLKCYFLLTWKHVHCKAP 519
>10_07_0024 -
11964126-11964542,11965235-11966176,11966245-11966291,
11966545-11966602,11968378-11968624,11970207-11970390,
11970410-11970548,11970689-11970796
Length = 713
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 154 IWSHAHSRLPMR 189
IW H HSR+PMR
Sbjct: 263 IWQHIHSRMPMR 274
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 27.1 bits (57), Expect = 9.6
Identities = 8/30 (26%), Positives = 22/30 (73%)
Frame = -1
Query: 107 IRYSIIKWFVVADVISDGVFTSAISLIKSY 18
+ Y++++W ++A ++++GVF+ IS ++
Sbjct: 23 LAYALLEWILIALLLANGVFSYLISRFAAF 52
>03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421
Length = 927
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/35 (28%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 107 IRYSIIKWFVVADVISDGVFTSAISLIKSY-GTNP 6
+ Y++++W ++A ++ +G+F+ AI+ +Y G P
Sbjct: 27 LAYAVLEWTLIALLLINGLFSYAIARFAAYFGLRP 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,105,799
Number of Sequences: 37544
Number of extensions: 264753
Number of successful extensions: 910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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