Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0972
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48158| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)           29   3.2  
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)                     27   7.4  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     27   7.4  
SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)                   27   9.8  
SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)        27   9.8  
SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32)                  27   9.8  

>SB_48158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -1

Query: 212 RFELGVKLLIGRRECAWLQIISKYPI-----SIEVKSIIPIRYSIIKWFVVADVISDGVF 48
           R +L V L +G  E AWL+   KY       + E   +  + + I++  +  DVI  G F
Sbjct: 21  RLQLCVILFVGWMERAWLEAQGKYAANGRCNNYEEDILEELEFEILRLSLKGDVIIQGDF 80

Query: 47  TSAISLIKSY 18
            +   +++ +
Sbjct: 81  NARTGILQEF 90


>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 339 FSSRVAVSRMGKKGGRESRSVGPGIHHLECFDPREPQCCDQTSLRTWR 196
           F + V  + +   GGR+       +  +EC+DP+  QC   TS+ T R
Sbjct: 322 FGAAVLGNNLYIVGGRDGLKT---LSTVECYDPKTMQCMSVTSMNTHR 366


>SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)
          Length = 1602

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -1

Query: 206 ELGVKLLIGRRECAWLQIISKYPISIEVKSIIPIRYSIIKWFVVADVISDGVFTSAISLI 27
           ++ VK+   R EC+W +         ++   + +R+  I  F+ AD   +G +T  + LI
Sbjct: 237 DVAVKIFSSREECSWFR-------EAQIYQTVMLRHENILGFIAADNKDNGAWTQ-LWLI 288

Query: 26  KSYGTN 9
             Y  N
Sbjct: 289 TDYHAN 294


>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 438 DPAPAELDSFALYEGEDIYEALAAVA 515
           +P P   + FA Y+ EDIY  L  +A
Sbjct: 143 EPFPPNTNKFAAYQDEDIYSNLEEIA 168


>SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 625

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -3

Query: 270 GIHHL---ECFDPREPQCCDQTSLRTWRK 193
           GI HL   ECFDP      D   +RT+R+
Sbjct: 337 GIQHLNSVECFDPENNTWTDVAPMRTYRR 365


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 135 QYRGQVHHPNQVQHYQVVCCCGCHQ*WCFHKCH 37
           ++R Q  H    +H+    CC CH  +C+++ H
Sbjct: 6   RHRHQNRHNRCYRHHHY--CCYCHHRYCYYRHH 36


>SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 174 RVCVAPDHQQVPNQYRGQVHHPNQVQHYQVVCCCGCHQ*WCFHKCHIPHQELW 16
           R+C   +H++ P   R   HH    ++ Q++          F  C +P Q LW
Sbjct: 101 RICFDLNHERAPKHERHAQHHQFHRENLQIIKTLATIV-ILFAVCLLPGQVLW 152


>SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)
          Length = 605

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 25  LMRDMALVKTPSLMTSATTNHLIMLYLIGMMDLTSILIGYL 147
           + R MAL++ P +  S   N ++    +   D+T I++GY+
Sbjct: 397 VQRLMALIRFPLMKQSEFINQVVPSGFLSPDDVTQIMLGYV 437


>SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)
          Length = 805

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 417 DAQLPLPRAESKTHYRTLNFRTILAN 340
           +A+LP  RA  K H+   N R +L+N
Sbjct: 21  NARLPAQRASGKLHFNRRNVREMLSN 46


>SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32)
          Length = 144

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 132 YRGQVHHPNQVQHYQVVCCCGCHQ*WCFHK 43
           +RGQ     + Q YQVVCC GC + +  H+
Sbjct: 90  HRGQAAQILECQ-YQVVCCPGCERQYKRHE 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,710,802
Number of Sequences: 59808
Number of extensions: 299551
Number of successful extensions: 861
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)