Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0972
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.1  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 417 LRPLHIADPAPAELDSFALYEGEDIYEAL 503
           L  LHIA P   ++DS   +  ED + ++
Sbjct: 522 LHYLHIAGPGKIQMDSSTNFGREDFWNSI 550


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 417 LRPLHIADPAPAELDSFALYEGEDIYEAL 503
           L  LHIA P   ++DS   +  ED + ++
Sbjct: 522 LHYLHIAGPGKIQMDSSTNFGREDFWNSI 550


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 212 RFELGVKLLIGRRECAWLQIISKYPISIEVKSIIPIRYSIIKWFVV 75
           RF  G++ +IG   C W +I   + I+     +    ++IIK+  V
Sbjct: 474 RFYDGIRDMIGYYPCCWWKIC--WTITTPAICVGVFTFNIIKFVPV 517


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 212 RFELGVKLLIGRRECAWLQIISKYPISIEVKSIIPIRYSIIKWFVV 75
           RF  G++ +IG   C W +I   + I+     +    ++IIK+  V
Sbjct: 527 RFYDGIRDMIGYYPCCWWKIC--WTITTPAICVGVFTFNIIKFVPV 570


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,485
Number of Sequences: 438
Number of extensions: 2447
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)