Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0972
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50440.1 68416.m05517 hydrolase, alpha/beta fold family prote...    30   0.86 
At2g39960.1 68415.m04910 microsomal signal peptidase 25 kDa subu...    29   2.6  
At1g08930.1 68414.m00994 early-responsive to dehydration stress ...    28   3.5  
At4g35900.1 68417.m05099 DNA-binding protein-related weak simila...    28   4.6  
At4g19580.1 68417.m02878 DNAJ heat shock N-terminal domain-conta...    28   4.6  
At1g60420.1 68414.m06802 DC1 domain-containing protein contains ...    27   8.0  

>At3g50440.1 68416.m05517 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 275

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 135 QYRGQVHHPNQVQ-HYQVVCCCGCHQ*WCFHK 43
           QY+ Q HH  Q Q H+ V     CH  WC+ K
Sbjct: 6   QYQMQTHHMQQQQLHHFVFVHGSCHGAWCWFK 37


>At2g39960.1 68415.m04910 microsomal signal peptidase 25 kDa
           subunit, putative (SPC25) identical to Probable
           microsomal signal peptidase 25 kDa subunit (EC 3.4.-.-)
           (SPase 25 kDa subunit) (SPC25) (Swiss-Prot:P58684)
           [Arabidopsis thaliana]; contains non-consensus AT-AC
           splice sites; contains 1 transmembrane domain;
          Length = 192

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 161 LQIISKYPISIEVKSIIPIRYSIIKWFVVADVISDGVFTSAI-SLIKSY 18
           L I S  P SI     + +  S+ +WF    V+ +G+F   + +LIK+Y
Sbjct: 135 LTIDSADPKSISAGKSVQLTKSVTQWFTKDGVLVEGLFWKDVEALIKNY 183


>At1g08930.1 68414.m00994 early-responsive to dehydration stress
           protein (ERD6) / sugar transporter family protein
           identical to ERD6 protein {Arabidopsis thaliana}
           GI:3123712; contains Pfam profile PF00083: major
           facilitator superfamily protein; contains TIGRfam
           TIGR00879: Sugar transporter
          Length = 496

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -1

Query: 512 DGGECLV--DVF--TFVECEGVKLGGCGVGNVQGSQ 417
           D GEC V   VF  TFV   G    GCGVG   G+Q
Sbjct: 48  DDGECRVTASVFLSTFVAVSGSFCTGCGVGFSSGAQ 83


>At4g35900.1 68417.m05099 DNA-binding protein-related weak
           similarity to DNA-binding factor gmlip15 [Zea mays]
           GI:14289167
          Length = 245

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
 Frame = -3

Query: 417 DAQLPLPRAESK--THYRTLNFRTILANFSSRVAVSRMGKKGGRESRSVGPGIHHLECFD 244
           D Q PL  + S   TH+   N      +F + V  S  GKK G++S        H     
Sbjct: 164 DNQDPLVTSNSNLHTHHHLSNAHAFNTSFEALVPSSSFGKKRGQDSNEGSGNRRHKRMIK 223

Query: 243 PRE 235
            RE
Sbjct: 224 NRE 226


>At4g19580.1 68417.m02878 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI4
           DnaJ homolog subfamily B member 12 {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 301

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 219 QTSLRTWRKAPHRQARVCVAPDHQQVPNQYR 127
           Q   +T +   H + R CVA DH++ P Q +
Sbjct: 117 QGQTQTQKSQNHTRTRTCVAYDHKRKPKQVK 147


>At1g60420.1 68414.m06802 DC1 domain-containing protein contains
           Pfam domain PF03107: DC1 domain
          Length = 578

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 58  SLMTSATTNHLIMLYLIGMMDLTSILIGYLLMIWSHAHSRLPMRSFTP 201
           SL+ S   N++  L   G   L S L+G  ++++  AH   P R+FTP
Sbjct: 338 SLLVSGDLNYV--LGKDGAKVLVSDLVGKTILMYFSAHWCPPCRAFTP 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,220,667
Number of Sequences: 28952
Number of extensions: 202973
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)