Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0971
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      87   1e-17
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      78   7e-15
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      67   1e-11
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   3.2  
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       29   3.2  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   4.3  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   7.5  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           27   9.9  
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)               27   9.9  
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 44/149 (29%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
 Frame = +2

Query: 191 SAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANK 370
           S  S++  LA   L + G T  ++ K   FP D   +     ++ +  +  G ++ MAN+
Sbjct: 33  SPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDGNQILMANR 92

Query: 371 VYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAK-SINDWVEENTNNRIKDLVNPD 547
           ++   G ++ E F   S++ F++++  +D+ KN+  A+ ++N WVE+ T ++IK+L+   
Sbjct: 93  LFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNLIPEG 152

Query: 548 SLSSATAAVLVNAIYFKGAWSSKFDERLT 634
             +  T   LVNA+YFKG+W   F+   T
Sbjct: 153 MFNKDTILCLVNAVYFKGSWMKHFNRNAT 181


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
 Frame = +2

Query: 215 LAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD---LRSIKGV-ELKMANKVYVH 382
           L  + L S G T  ++    G+ + +   T    K      L S  G  E+++ NK++ H
Sbjct: 5   LGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGH 64

Query: 383 DGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNRIKDLVNPDSLSS 559
           D  ++ E F   +R+ ++S++  +DF +K   A K +N WV + T   IK+L+    ++S
Sbjct: 65  DEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVINS 124

Query: 560 ATAAVLVNAIYFKGAWSSKFDERLT 634
            T  ++VNA+YFKG W  +F E  T
Sbjct: 125 LTRLIIVNAVYFKGVWKKEFGEENT 149


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
 Frame = +2

Query: 350 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNRI 526
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE T  +I
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108

Query: 527 KDLVNPDSLSSATAAVLVNAIYFKGAWSSKF 619
            DL+ P   +  T   LVNAIYFKG W   F
Sbjct: 109 CDLIAPGVFNMLTRLTLVNAIYFKGMWDKPF 139


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 39/199 (19%), Positives = 75/199 (37%), Gaps = 3/199 (1%)
 Frame = -2

Query: 645  SRSLVSRSSNLELHAPLK*MALTRTAAVAELSESGLTKSLMRLLVFSSTQSLIDLAATVF 466
            S S+V   +   +  PLK   +  TAA    + + +  ++        T +    AAT  
Sbjct: 1089 SSSMVQAKAASSITTPLKTTVVAVTAAATTTAATTIAAAVTASTASVVTTTATVAAATTT 1148

Query: 465  FEKSMFWTSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASS 286
             EK+   T+ +  +  T A          T T  A +++      ++  L A  V  A++
Sbjct: 1149 AEKATTTTAAMVKATTTAAAVTASTASVVTKT--ATVAAATTTAEKATTLTAAMVE-ATT 1205

Query: 285  SGKPIAFKSSSWVSPSEAKAN*ARGG---STENAERTTLFPGLFFTTSVNILAVKLSFPF 115
            +   +   ++S V+ +  KA         +T      T       TT+  I +  ++ P 
Sbjct: 1206 TAAAVTASTASVVTTTAEKATTTTAAMVEATTTEAAVTASTASVVTTTATIASSTITTPS 1265

Query: 114  LSTLERFVTAAIAAMAIVN 58
            LS +     +++   A  N
Sbjct: 1266 LSAISTTTASSVQVSAATN 1284


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 402 RILQSFPGTSSIRTSKTLISRRIQSQLS 485
           R+  SFPG S      TL++R  QSQ+S
Sbjct: 65  RLYDSFPGASRSEAESTLLARMRQSQVS 92


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 392 KLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDW---VEENTNNRIKD 532
           K +E+  + S  +F+ + +N+DFS +     ++ DW   VE    N ++D
Sbjct: 460 KFEEDLRISS--MFSGEGENVDFSTDLYPTGNVEDWLLEVENTMRNSLRD 507


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +2

Query: 77  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 244
           +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 85  CHCRDGDSKQTNDCL 41
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 242 HQKLKLTEREEAAPKMPRGQRFSL 171
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 242 HQKLKLTEREEAAPKMPRGQRFSL 171
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 242 HQKLKLTEREEAAPKMPRGQRFSL 171
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 242 HQKLKLTEREEAAPKMPRGQRFSL 171
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 242 HQKLKLTEREEAAPKMPRGQRFSL 171
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 1541

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 385  WWKTRREFCSRFQGRLQFGRPK 450
            W + RRE+C++ Q R ++ +P+
Sbjct: 1275 WLRWRREYCTQLQSRQKWNKPQ 1296


>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 383 DGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNPDS 550
           D   + +N  ++  +  NSD  N   + NT    +I+D    + NN I D  N D+
Sbjct: 211 DNNNISDNNNIIDNN--NSDNNNTSDNNNTSDNNNISDNNNTSDNNNISDNNNSDN 264


>SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)
          Length = 224

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = +2

Query: 284 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 463
           D   +R+    K    R I+G   +M +K+      KLD  F  +  D   +  ++   +
Sbjct: 30  DSGLVRSPAVIKPHRKRRIRGTAKRMRSKLSKRQVNKLDAAF--MENDFPTTIARHKLAA 87

Query: 464 KNTVAAKSINDWVEEN-TNNR--IKDLVNPDSLSSATAAV 574
           +     K I  W+++N   NR  ++DL  P +  SA  ++
Sbjct: 88  EIKAPVKRIKSWLKQNRAKNRAQLRDLA-PSASESAAISI 126


>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 242 HQKLKLTEREEAAPKMPRGQRF 177
           H+ L + ER+ ++PK PR  +F
Sbjct: 21  HENLSINERDSSSPKRPRQHQF 42


>SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 158 VKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAI 298
           ++  P  S VLS  S  PPL  +    +  T   + + I  PD++A+
Sbjct: 221 IELGPQSSGVLSLTSDPPPLEAMGKEGEAHTDSGVEEEIDIPDEEAV 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,968,595
Number of Sequences: 59808
Number of extensions: 381813
Number of successful extensions: 1299
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)