Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0970
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   2.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   2.8  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.8  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    25   6.4  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   8.4  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -2

Query: 279 PESCKWSMDLIKYSVHDCIYLGDRVLTVSIREHCLHVTLINLKYFKY*VTSCF 121
           P+    ++DL+K    +C+    R  T ++   CL   L  + YF   +  C+
Sbjct: 475 PQMSDLAIDLLKVLTRNCLVDSARYSTANVPPLCLDALLNFIYYFHEHLQPCY 527


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 258  MDLIKYSVHDCIYLGDRVLTVSIREHCLHVTLINLKYF 145
            MD I+ S+H C YL ++ L VS+ +   H ++  L ++
Sbjct: 4437 MDSIR-SIHLCSYLRNKGLNVSVSDILQHSSIEKLAHY 4473


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 326 NCKYIYCCSRMSNH 285
           NC Y++CC+  S+H
Sbjct: 103 NCGYLFCCNHESDH 116


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 225 IYLGDRVLTVSIREHCLHVTLINLKYFKY 139
           I+    + T   R   LH TL+N +Y KY
Sbjct: 125 IFTEHNLFTKDARPLTLHCTLLNSRYIKY 153


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 166 VNKFEIFQILSYIMFLYVIFILF 98
           + KF++F ILSY + L+++ + F
Sbjct: 1   MKKFQLFSILSYFVALFLLPMAF 23


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -2

Query: 486 VHYLLRK*HTTMYTILYHDNNIIKFTHISIYIHYNILVYSH 364
           VH L++K          HD+ +  +  +S+  +Y +  Y H
Sbjct: 48  VHKLIQKDERYTAVFFAHDSTVFSYLGLSLKAYYGMDYYLH 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,449
Number of Sequences: 5004
Number of extensions: 30794
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)