Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0970
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                35   0.043
SB_44934| Best HMM Match : UPF0061 (HMM E-Value=0.0055)                27   8.7  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 34.7 bits (76), Expect = 0.043
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 343 CVYDYICM*IYEYIIVNIYRYMCKLYNIIIMI*YCVHCCVLFS 471
           C+Y Y+C  IY Y+   +Y Y+C L  + + +   +  CV F+
Sbjct: 249 CIYAYLCTRIYAYVCACVYDYVCTL-RLRLFVHLRLRLCVHFA 290



 Score = 33.5 bits (73), Expect = 0.10
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 331 VFLCCVYDYICM*IYEYIIVNIYRYMC 411
           +F  CVY + C  IY Y+   IY Y+C
Sbjct: 237 MFALCVYAHACTCIYAYLCTRIYAYVC 263


>SB_44934| Best HMM Match : UPF0061 (HMM E-Value=0.0055)
          Length = 270

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 282 QPESCKWSMDLIKYSVHDCIYLGDRVL 202
           QPE CKW++  +  ++HD + + DR L
Sbjct: 239 QPEICKWNLMKLGEAIHDALSV-DRSL 264


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 459  TTMYTILYHDNNIIKFTHISIYIHYNILVYSH 364
            T +Y  LYH N+I +   +  Y  YN+ + ++
Sbjct: 2407 TKIYQDLYHGNSITRIEGLESYTLYNVTIRAY 2438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,529,021
Number of Sequences: 59808
Number of extensions: 218888
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)