Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0970
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z27079-7|CAA81592.1|  293|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical p...    27   5.8  

>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 169  YVNKFEIFQILSYIMFLYVIFILF 98
            Y N F+IFQI S +   +V+FI F
Sbjct: 1976 YSNHFQIFQIRSCLCACFVLFIFF 1999


>Z27079-7|CAA81592.1|  293|Caenorhabditis elegans Hypothetical
           protein T05G5.7 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -3

Query: 329 TNCKYIYCCSRMSNHHSQSLASGLWTLLSIQFMT 228
           + C +++CC+R     ++SL+S L + + +  +T
Sbjct: 31  SECSFLFCCARAREKLTRSLSSRLISFIRLLLLT 64


>Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical
           protein R10D12.10 protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 311 YCCSRMSNHHSQSLASGLWTLLSI 240
           YC  RM NH  Q     LW+ L +
Sbjct: 199 YCSPRMHNHEEQGRVDDLWSWLYV 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,547,031
Number of Sequences: 27780
Number of extensions: 172641
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)