Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0970
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.2  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 173 CKQCSRILTVNTLSPRYIQS 232
           C+ C++ILT  T   R+IQ+
Sbjct: 5   CEPCNKILTSLTRLRRHIQN 24


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 392 IYIDICVNFIILLS*YNIVYIVVCYFR 472
           + +DI V  +  +S  ++ Y + CYFR
Sbjct: 32  VEVDIMVRSMGPISEVDMTYSMDCYFR 58


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 334 FLCCVYDYICM*IYEYIIVN 393
           F  CV DY+   I +Y+I N
Sbjct: 117 FSRCVIDYVKFHITQYMISN 136


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 331 VFLCCVYDYICM*IYEYIIVNIYRYMCKLYNI 426
           ++ CC  D   M +YE+ I   Y  +   Y I
Sbjct: 230 MYACCPNDTYPMIVYEFSISRHYGILHATYVI 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,802
Number of Sequences: 438
Number of extensions: 2357
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)